Result : EXP01748
| Protein Information |
| Information Type | Description |
|---|---|
| Protein name | EXP01748 |
| NCBI Accession ID | NC_017502.1 |
| Organism | Mycoplasma gallisepticum R(high) |
| Left | 182322 |
| Right | 182495 |
| Strand | + |
| Nucleotide Sequence | ATGGCAGTACAACAAAGAAGATCTTCGAAACACAGAAGAGATAAAAGACGTTCACATGATGCTTTAGCAGTTAACTTAATTAACGTATGTAAGCATTGTGGGAAATTCAAAAGAGCTCACAGAGCTTGCTCTTGCGGAATGTATAACGAATTAAGAATTACCAAAGCAAAATAA |
| Sequence | MAVQQRRSSKHRRDKRRSHDALAVNLINVCKHCGKFKRAHRACSCGMYNELRITKAK |
| Source of smORF | Protein-level |
| Function | translation [GO:0006412];large ribosomal subunit [GO:0015934];structural constituent of ribosome [GO:0003735] The ORF matches to the profile of cl09115. Profile Description: Ribosomal L32p protein family. This protein describes bacterial ribosomal protein L32. The noise cutoff is set low enough to include the equivalent protein from mitochondria and chloroplasts. No related proteins from the Archaea nor from the eukaryotic cytosol are detected by this model. This model is a fragment model; the putative L32 of some species shows similarity only toward the N-terminus. [Protein synthesis, Ribosomal proteins: synthesis and modification] |
| Pubmed ID | 30796087 |
| Domain | CDD:415589 |
| Functional Category | Gene Ontology/Expression based functional assignment |
| Uniprot ID | P47603 |
| ORF Length (Amino Acid) | 57 |
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| Conservation Analysis |
No. of Species: 91
| Sr.No. | Left Position | Right Position | Strand | NCBI Accession id | Species Name |
|---|---|---|---|---|---|
| 1 | 158928 | 159101 | + | NZ_CP059674.1 | Mycoplasma tullyi |
| 2 | 181113 | 181286 | + | NC_018406.1 | Mycoplasma gallisepticum VA94_7994-1-7P |
| 3 | 460497 | 460670 | + | NC_000908.2 | Mycoplasma genitalium G37 |
| 4 | 655565 | 655738 | + | NZ_CP010546.1 | Mycoplasma pneumoniae FH |
| 5 | 1158060 | 1158266 | - | NZ_CP010650.1 | Phaeobacter inhibens |
| 6 | 2275404 | 2275610 | + | NZ_CP021047.1 | Phaeobacter gallaeciensis |
| 7 | 1133243 | 1133449 | - | NZ_CP016364.1 | Phaeobacter porticola |
| 8 | 5444947 | 5445120 | + | NZ_CP016809.1 | Paenibacillus ihbetae |
| 9 | 3286658 | 3286831 | + | NZ_CP034437.1 | Paenibacillus albus |
| 10 | 2750372 | 2750545 | + | NZ_CP048209.1 | Paenibacillus lycopersici |
| 11 | 1054381 | 1054554 | + | NZ_CP045293.1 | Paenibacillus guangzhouensis |
| 12 | 912440 | 912613 | - | NZ_CP048286.1 | Paenibacillus rhizovicinus |
| 13 | 1012418 | 1012591 | + | NZ_CP014167.1 | Paenibacillus yonginensis |
| 14 | 1122257 | 1122463 | - | NZ_CP041159.1 | Leisingera aquaemixtae |
| 15 | 2093993 | 2094199 | + | NC_023135.1 | Leisingera methylohalidivorans DSM 14336 |
| 16 | 2471199 | 2471372 | - | NZ_AP019308.1 | Paenibacillus baekrokdamisoli |
| 17 | 572043 | 572213 | + | NZ_AP019711.1 | Amedibacterium intestinale |
| 18 | 3571920 | 3572093 | + | NZ_CP011388.1 | Paenibacillus swuensis |
| 19 | 2588071 | 2588244 | + | NZ_CP013023.1 | Paenibacillus bovis |
| 20 | 2609470 | 2609643 | - | NZ_CP019659.1 | Paenibacillus larvae subsp. larvae |
| 21 | 1908713 | 1908913 | - | NZ_CP033219.1 | Parasedimentitalea marina |
| 22 | 75057 | 75236 | - | NZ_CP034179.1 | Caenibius tardaugens NBRC 16725 |
| 23 | 4003695 | 4003868 | - | NZ_CP034248.1 | Paenibacillus lentus |
| 24 | 1889422 | 1889595 | - | NZ_CP018776.1 | Staphylococcus condimenti |
| 25 | 6132588 | 6132761 | + | NZ_CP045295.1 | Paenibacillus cellulositrophicus |
| 26 | 5366660 | 5366839 | + | NZ_CP006644.1 | Sphingomonas sanxanigenens DSM 19645 = NX02 |
| 27 | 4085269 | 4085442 | - | NZ_CP034346.1 | Paenibacillus lutimineralis |
| 28 | 2539668 | 2539841 | + | NZ_CP021780.1 | Paenibacillus donghaensis |
| 29 | 1519180 | 1519329 | + | NZ_CP040463.1 | Caminibacter mediatlanticus TB-2 |
| 30 | 6090049 | 6090222 | + | NZ_CP054614.1 | Paenibacillus barcinonensis |
| 31 | 2608753 | 2608926 | + | NZ_CP004078.1 | Paenibacillus sabinae T27 |
| 32 | 3024857 | 3025030 | + | NZ_CP009288.1 | Paenibacillus durus |
| 33 | 3026616 | 3026789 | + | NZ_CP009428.1 | Paenibacillus odorifer |
| 34 | 5261909 | 5262082 | + | NZ_CP048429.1 | Paenibacillus jilunlii |
| 35 | 3355085 | 3355258 | + | NZ_CP009287.1 | Paenibacillus graminis |
| 36 | 5260224 | 5260397 | + | NZ_CP068595.1 | Paenibacillus sonchi |
| 37 | 3732024 | 3732197 | + | NZ_LN831776.1 | Paenibacillus riograndensis SBR5 |
| 38 | 3847434 | 3847607 | + | NZ_CP009285.1 | Paenibacillus borealis |
| 39 | 4637492 | 4637665 | + | NZ_CP041217.1 | Saccharibacillus brassicae |
| 40 | 1276465 | 1276644 | + | NZ_CP015963.1 | Altererythrobacter ishigakiensis |
| 41 | 785250 | 785423 | + | NZ_CP035492.1 | Paenibacillus protaetiae |
| 42 | 2776749 | 2776922 | + | NZ_CP009286.1 | Paenibacillus stellifer |
| 43 | 3506843 | 3507016 | - | NZ_CP020028.1 | Paenibacillus kribbensis |
| 44 | 1178578 | 1178751 | + | NZ_CP033460.1 | Staphylococcus debuckii |
| 45 | 743797 | 743970 | + | NZ_LT906464.1 | Staphylococcus muscae |
| 46 | 1453868 | 1454074 | - | NZ_CP065915.1 | Pelagovum pacificum |
| 47 | 4355197 | 4355370 | + | NZ_CP045298.1 | Paenibacillus brasilensis |
| 48 | 3825035 | 3825208 | + | NC_016641.1 | Paenibacillus terrae HPL-003 |
| 49 | 1226710 | 1226883 | + | NZ_CP013652.1 | Paenibacillus naphthalenovorans |
| 50 | 3489690 | 3489863 | + | NZ_CP034235.1 | Paenibacillus psychroresistens |
| 51 | 2948786 | 2948965 | - | NZ_CP042345.1 | Novosphingobium ginsenosidimutans |
| 52 | 4553645 | 4553818 | + | NZ_CP011058.1 | Paenibacillus beijingensis |
| 53 | 2799146 | 2799319 | + | NZ_CP043611.1 | Paenibacillus antarcticus |
| 54 | 1693545 | 1693721 | + | NZ_AP017312.1 | Aneurinibacillus soli |
| 55 | 1555259 | 1555438 | - | NZ_CP011805.1 | Pelagerythrobacter marensis |
| 56 | 538130 | 538309 | - | NZ_CP049889.1 | Jeotgalibaca porci |
| 57 | 2516040 | 2516219 | - | NC_007794.1 | Novosphingobium aromaticivorans DSM 12444 |
| 58 | 2100356 | 2100535 | + | NZ_CP020538.1 | Sphingobium herbicidovorans |
| 59 | 1593344 | 1593523 | - | NZ_CP012669.1 | Altererythrobacter epoxidivorans |
| 60 | 2459327 | 2459506 | + | NZ_CP024920.1 | Qipengyuania seohaensis |
| 61 | 1136158 | 1136340 | - | NC_017059.1 | Pararhodospirillum photometricum DSM 122 |
| 62 | 2085910 | 2086083 | + | NZ_CP020773.1 | Staphylococcus lutrae |
| 63 | 878822 | 878995 | + | NC_014925.1 | Staphylococcus pseudintermedius HKU10-03 |
| 64 | 6400738 | 6400911 | - | NC_017672.3 | Paenibacillus mucilaginosus K02 |
| 65 | 1542477 | 1542656 | - | NZ_CP018221.1 | Tardibacter chloracetimidivorans |
| 66 | 725284 | 725457 | + | NZ_CP045927.1 | Staphylococcus agnetis |
| 67 | 1788692 | 1788865 | - | NZ_CP008747.1 | Staphylococcus hyicus |
| 68 | 1836028 | 1836207 | + | NZ_CP016591.1 | Tsuneonella dongtanensis |
| 69 | 1343599 | 1343772 | + | NZ_AP021853.1 | Sporolactobacillus terrae |
| 70 | 2434069 | 2434242 | - | NC_013791.2 | Alkalihalobacillus pseudofirmus OF4 |
| 71 | 1956259 | 1956444 | + | NC_017584.1 | Rhodospirillum rubrum F11 |
| 72 | 2515516 | 2515695 | - | NZ_CP060035.1 | Sphingobium fuliginis |
| 73 | 4796897 | 4797082 | + | NZ_CP030265.1 | Skermanella pratensis |
| 74 | 2224137 | 2224310 | - | NC_019897.1 | Thermobacillus composti KWC4 |
| 75 | 384396 | 384545 | - | NZ_CP027432.2 | Caminibacter pacificus |
| 76 | 1269370 | 1269543 | + | NZ_CP012024.1 | Bacillus smithii |
| 77 | 2183816 | 2183989 | - | NZ_CP048103.1 | Kroppenstedtia eburnea |
| 78 | 3370820 | 3370993 | - | NZ_CP014616.1 | Sporosarcina psychrophila |
| 79 | 1039243 | 1039416 | - | NZ_CP019573.1 | Abyssicoccus albus |
| 80 | 2707246 | 2707419 | - | NC_002570.2 | Alkalihalobacillus halodurans C-125 |
| 81 | 3302786 | 3302959 | + | NZ_CP063356.1 | Anaerobacillus isosaccharinicus |
| 82 | 1289509 | 1289682 | + | NZ_CP031223.1 | Psychrobacillus glaciei |
| 83 | 804911 | 805084 | - | NZ_CP065729.1 | Macrococcus caseolyticus |
| 84 | 913722 | 913895 | + | NZ_CP047361.1 | Macrococcus canis |
| 85 | 985836 | 986009 | + | NZ_CP054482.1 | Macrococcus bohemicus |
| 86 | 1094202 | 1094369 | + | NC_014378.1 | Acetohalobium arabaticum DSM 5501 |
| 87 | 2058901 | 2059074 | + | NZ_CP053989.1 | Niallia circulans |
| 88 | 2873238 | 2873411 | - | NZ_CP070511.1 | Parageobacillus toebii |
| 89 | 1709708 | 1709881 | + | NZ_CP016622.1 | Parageobacillus thermoglucosidasius |
| 90 | 1475489 | 1475668 | + | NZ_CP039543.1 | Desulfovibrio marinus |
| 91 | 1113778 | 1113951 | + | NC_011899.1 | Halothermothrix orenii H 168 |
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| Neighborhood Conservation Analysis |
* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Representative Chosen(Species): NZ_CP016809.1
| Sr.No. | Domain | Co-occurrence Frequency | No. of species in which domain occurs with smORF | Median distance b/w smORF and domain bearing ORFs | Orientation relative to smORF | PFAM Information |
|---|---|---|---|---|---|---|
| 1 | PF08541.12 | 0.7 | 64 | 1763.5 | same-strand | 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal |
| 2 | PF08545.12 | 0.7 | 64 | 1763.5 | same-strand | 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III |
| 3 | PF02504.17 | 0.7 | 64 | 760.5 | same-strand | Fatty acid synthesis protein |
| 4 | PF02620.19 | 0.79 | 72 | 62.5 | same-strand | Large ribosomal RNA subunit accumulation protein YceD |
| 5 | PF05636.13 | 0.63 | 57 | 749 | opposite-strand | HIGH Nucleotidyl Transferase |
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