Result : EXP01738
| Protein Information |
| Information Type | Description |
|---|---|
| Protein name | EXP01738 |
| NCBI Accession ID | BA000022.2 |
| Organism | Synechocystis sp. PCC 6803 |
| Left | 3116440 |
| Right | 3116682 |
| Strand | - |
| Nucleotide Sequence | ATGGGAGGATTGACCGTGAATCTAGAAACTCTGGAATTCGTCATTTACCCCGACGGCCGGGTGAAGGAAACGGTAACCGGCATTGTGGGTCGCTCTTGTCAGGAAGTGACCGCGGCGATCGAGGCCGAACTAGGGGTAGTGCTTACCCAGCAGACTACTTCGGAGTTTTTTGCCCAAACCAGTCCGTTGAACCAATCAGTTCAGCAATCCCAGACTCTTTCTAGCTGGCCTGGGGGAAGTTAA |
| Sequence | MGGLTVNLETLEFVIYPDGRVKETVTGIVGRSCQEVTAAIEAELGVVLTQQTTSEFFAQTSPLNQSVQQSQTLSSWPGGS |
| Source of smORF | Protein-level |
| Function | The ORF matches to the profile of pfam11211. Profile Description: Protein of unknown function (DUF2997). This family of proteins has no known function. |
| Pubmed ID | 30796087 |
| Domain | CDD:402681 |
| Functional Category | Conserved domain based functional assignment |
| Uniprot ID | |
| ORF Length (Amino Acid) | 80 |
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| Conservation Analysis |
No. of Species: 23
| Sr.No. | Left Position | Right Position | Strand | NCBI Accession id | Species Name |
|---|---|---|---|---|---|
| 1 | 1904206 | 1904415 | - | NC_019748.1 | Stanieria cyanosphaera PCC 7437 |
| 2 | 3413224 | 3413433 | - | NC_019689.1 | Pleurocapsa sp. PCC 7327 |
| 3 | 2678293 | 2678502 | - | NZ_AP014638.1 | Leptolyngbya boryana IAM M-101 |
| 4 | 5562289 | 5562510 | + | NC_014501.1 | Gloeothece verrucosa PCC 7822 |
| 5 | 933939 | 934160 | + | NC_011729.1 | Gloeothece citriformis PCC 7424 |
| 6 | 6355154 | 6355366 | - | NC_019771.1 | Anabaena cylindrica PCC 7122 |
| 7 | 4784014 | 4784229 | + | NC_010296.1 | Microcystis aeruginosa NIES-843 |
| 8 | 3852339 | 3852548 | + | NC_019729.1 | Oscillatoria nigro-viridis PCC 7112 |
| 9 | 847935 | 848144 | + | NC_019693.1 | Oscillatoria acuminata PCC 6304 |
| 10 | 4585944 | 4586165 | + | NZ_CP047242.1 | Trichormus variabilis 0441 |
| 11 | 5483246 | 5483461 | - | NZ_CP021983.2 | Halomicronema hongdechloris C2206 |
| 12 | 1742735 | 1742944 | + | NC_019751.1 | Calothrix sp. PCC 6303 |
| 13 | 1728865 | 1729074 | - | NC_009925.1 | Acaryochloris marina MBIC11017 |
| 14 | 3161371 | 3161580 | - | NZ_CP031941.1 | Nostoc sphaeroides |
| 15 | 4601481 | 4601690 | - | NZ_CP024785.1 | Nostoc flagelliforme CCNUN1 |
| 16 | 159656 | 159877 | - | NC_010628.1 | Nostoc punctiforme PCC 73102 |
| 17 | 1039579 | 1039788 | + | NZ_CP054698.1 | Nostoc edaphicum CCNP1411 |
| 18 | 4637154 | 4637369 | - | NC_019753.1 | Crinalium epipsammum PCC 9333 |
| 19 | 3651969 | 3652184 | + | NC_019780.1 | Dactylococcopsis salina PCC 8305 |
| 20 | 95957 | 96169 | - | NC_014248.1 | 'Nostoc azollae' 0708 |
| 21 | 3981275 | 3981493 | - | NC_019776.1 | Cyanobacterium aponinum PCC 10605 |
| 22 | 2663146 | 2663358 | - | NZ_CP060822.1 | Cylindrospermopsis curvispora GIHE-G1 |
| 23 | 419749 | 419961 | - | NZ_CP018092.1 | Synechococcus lividus PCC 6715 |
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| Neighborhood Conservation Analysis |
* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Representative Chosen(Species): NC_019748.1
| Sr.No. | Domain | Co-occurrence Frequency | No. of species in which domain occurs with smORF | Median distance b/w smORF and domain bearing ORFs | Orientation relative to smORF | PFAM Information |
|---|---|---|---|---|---|---|
| 1 | PF13370.8 | 1.0 | 23 | 431 | same-strand | 4Fe-4S single cluster domain of Ferredoxin I |
| 2 | PF13459.8 | 1.0 | 23 | 431 | same-strand | 4Fe-4S single cluster domain |
| 3 | PF06868.13 | 1.0 | 23 | 41 | same-strand | Protein of unknown function (DUF1257) |
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