Result : EXP01729
| Protein Information |
| Information Type | Description |
|---|---|
| Protein name | EXP01729 |
| NCBI Accession ID | BA000022.2 |
| Organism | Synechocystis sp. PCC 6803 |
| Left | 561709 |
| Right | 561963 |
| Strand | - |
| Nucleotide Sequence | ATGCCTCCTCGTTGGCCCCGTAAACCCGACCGTAATGACCCTGCCTTTCGCCGTTTGGATGACCGGATGAATTTTGCTGTCCATGTGGCAGTATTTTTAGCGATTAACTCTGGCCTATGGTTTGTTCATAACTTAAACAAGGCCGATTGGTCTTGGTTGACACCTCTTTCGGGCATCTGGCTAGGGGGTTTGCTTTTGCACCTGTTGTACATTGCCGTTATTGCCGATTATTCCCCTGCCACTGGTAAGAGTTAA |
| Sequence | MPPRWPRKPDRNDPAFRRLDDRMNFAVHVAVFLAINSGLWFVHNLNKADWSWLTPLSGIWLGGLLLHLLYIAVIADYSPATGKS |
| Source of smORF | Protein-level |
| Function | |
| Pubmed ID | 30796087 |
| Domain | |
| Functional Category | Function not yet assigned |
| Uniprot ID | |
| ORF Length (Amino Acid) | 84 |
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| Conservation Analysis |
No. of Species: 23
| Sr.No. | Left Position | Right Position | Strand | NCBI Accession id | Species Name |
|---|---|---|---|---|---|
| 1 | 2227036 | 2227287 | + | NC_019748.1 | Stanieria cyanosphaera PCC 7437 |
| 2 | 3501173 | 3501430 | + | NC_019689.1 | Pleurocapsa sp. PCC 7327 |
| 3 | 4992135 | 4992386 | - | NC_014501.1 | Gloeothece verrucosa PCC 7822 |
| 4 | 633857 | 634114 | - | NC_019729.1 | Oscillatoria nigro-viridis PCC 7112 |
| 5 | 1088959 | 1089210 | + | NC_011729.1 | Gloeothece citriformis PCC 7424 |
| 6 | 2031314 | 2031562 | + | NC_019776.1 | Cyanobacterium aponinum PCC 10605 |
| 7 | 3280136 | 3280393 | - | NZ_CP060822.1 | Cylindrospermopsis curvispora GIHE-G1 |
| 8 | 5542860 | 5543117 | + | NZ_CP047242.1 | Trichormus variabilis 0441 |
| 9 | 2749149 | 2749406 | + | NC_014248.1 | 'Nostoc azollae' 0708 |
| 10 | 5651088 | 5651342 | + | NC_010296.1 | Microcystis aeruginosa NIES-843 |
| 11 | 5825342 | 5825614 | - | NC_019695.1 | Chroococcidiopsis thermalis PCC 7203 |
| 12 | 4374630 | 4374887 | + | NC_019771.1 | Anabaena cylindrica PCC 7122 |
| 13 | 25862 | 26119 | + | NZ_CP054698.1 | Nostoc edaphicum CCNP1411 |
| 14 | 6413783 | 6414040 | - | NZ_CP031941.1 | Nostoc sphaeroides |
| 15 | 1564424 | 1564684 | + | NC_019780.1 | Dactylococcopsis salina PCC 8305 |
| 16 | 1700441 | 1700701 | - | NZ_CP042326.1 | Euhalothece natronophila Z-M001 |
| 17 | 4722182 | 4722439 | + | NZ_CP024785.1 | Nostoc flagelliforme CCNUN1 |
| 18 | 5479682 | 5479936 | + | NC_019751.1 | Calothrix sp. PCC 6303 |
| 19 | 777114 | 777371 | - | NC_010628.1 | Nostoc punctiforme PCC 73102 |
| 20 | 3690038 | 3690289 | + | NC_019693.1 | Oscillatoria acuminata PCC 6304 |
| 21 | 1462275 | 1462508 | - | NZ_AP018202.1 | Thermostichus vulcanus NIES-2134 |
| 22 | 1584354 | 1584587 | - | NC_004113.1 | Thermosynechococcus vestitus BP-1 |
| 23 | 621114 | 621368 | - | NZ_CP018092.1 | Synechococcus lividus PCC 6715 |
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| Neighborhood Conservation Analysis |
* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Representative Chosen(Species): NC_019748.1
| Sr.No. | Domain | Co-occurrence Frequency | No. of species in which domain occurs with smORF | Median distance b/w smORF and domain bearing ORFs | Orientation relative to smORF | PFAM Information |
|---|---|---|---|---|---|---|
| 1 | PF11378.10 | 0.87 | 20 | 35.0 | same-strand | Protein of unknown function (DUF3181) |
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