Result : EXP01722
| Protein Information |
| Information Type | Description |
|---|---|
| Protein name | EXP01722 |
| NCBI Accession ID | BA000022.2 |
| Organism | Synechocystis sp. PCC 6803 |
| Left | 2580291 |
| Right | 2580593 |
| Strand | - |
| Nucleotide Sequence | TTGGCAATTTGTCCTTGCCCTAACTCCCCGATCTCAATGAGTAACGAAATTTACCTTAACCATCCGACCTTCGGGCTTTTGTATCAGATTTGTTTCTTGGATGATAATCAGGAGATTTTTACTACCCTTTATGCCCAAAGGTTATTTTTTTTGGTAAAAACGACGCCGAACAATACCCAATTTGAACCCATTACCAGGGCGGATGCCAAACTATTAATTGAAAATCGCCTGAGGTTTCTACGCCGGGCCGGGGATTTTAAGGCCTATGACGTGTTGGCAAAGTTACATAAAAACACTTTTTGA |
| Sequence | LAICPCPNSPISMSNEIYLNHPTFGLLYQICFLDDNQEIFTTLYAQRLFFLVKTTPNNTQFEPITRADAKLLIENRLRFLRRAGDFKAYDVLAKLHKNTF |
| Source of smORF | Protein-level |
| Function | The ORF matches to the profile of pfam12058. Profile Description: Protein of unknown function (DUF3539). This family of proteins is functionally uncharacterized. This protein is found in bacteria. Proteins in this family are about 90 amino acids in length. This protein has a conserved NHP sequence motif. |
| Pubmed ID | 30796087 |
| Domain | CDD:403322 |
| Functional Category | Conserved domain based functional assignment |
| Uniprot ID | |
| ORF Length (Amino Acid) | 100 |
++ More..
| Conservation Analysis |
No. of Species: 27
| Sr.No. | Left Position | Right Position | Strand | NCBI Accession id | Species Name |
|---|---|---|---|---|---|
| 1 | 4243118 | 4243387 | - | NC_019753.1 | Crinalium epipsammum PCC 9333 |
| 2 | 1314020 | 1314271 | + | NC_019689.1 | Pleurocapsa sp. PCC 7327 |
| 3 | 5155976 | 5156248 | + | NZ_CP021983.2 | Halomicronema hongdechloris C2206 |
| 4 | 606808 | 607077 | - | NC_011729.1 | Gloeothece citriformis PCC 7424 |
| 5 | 5881801 | 5882070 | - | NC_019693.1 | Oscillatoria acuminata PCC 6304 |
| 6 | 2601237 | 2601509 | - | NC_014501.1 | Gloeothece verrucosa PCC 7822 |
| 7 | 5944839 | 5945108 | - | NC_019729.1 | Oscillatoria nigro-viridis PCC 7112 |
| 8 | 1880625 | 1880894 | - | NC_019695.1 | Chroococcidiopsis thermalis PCC 7203 |
| 9 | 984418 | 984687 | - | NZ_AP014638.1 | Leptolyngbya boryana IAM M-101 |
| 10 | 1039457 | 1039726 | + | NZ_CP018092.1 | Synechococcus lividus PCC 6715 |
| 11 | 2466800 | 2467072 | + | NZ_CP042326.1 | Euhalothece natronophila Z-M001 |
| 12 | 5423493 | 5423762 | + | NC_009925.1 | Acaryochloris marina MBIC11017 |
| 13 | 3768605 | 3768883 | - | NC_019748.1 | Stanieria cyanosphaera PCC 7437 |
| 14 | 4504181 | 4504459 | - | NC_014248.1 | 'Nostoc azollae' 0708 |
| 15 | 607912 | 608181 | - | NC_019776.1 | Cyanobacterium aponinum PCC 10605 |
| 16 | 1555453 | 1555734 | + | NZ_AP018202.1 | Thermostichus vulcanus NIES-2134 |
| 17 | 1673475 | 1673756 | - | NC_004113.1 | Thermosynechococcus vestitus BP-1 |
| 18 | 569851 | 570123 | - | NC_019780.1 | Dactylococcopsis salina PCC 8305 |
| 19 | 2085891 | 2086169 | - | NC_010628.1 | Nostoc punctiforme PCC 73102 |
| 20 | 4915443 | 4915721 | + | NZ_CP047242.1 | Trichormus variabilis 0441 |
| 21 | 4686650 | 4686928 | + | NZ_CP031941.1 | Nostoc sphaeroides |
| 22 | 3012955 | 3013233 | + | NZ_CP024785.1 | Nostoc flagelliforme CCNUN1 |
| 23 | 3509722 | 3510000 | + | NC_019771.1 | Anabaena cylindrica PCC 7122 |
| 24 | 5149113 | 5149385 | - | NC_010296.1 | Microcystis aeruginosa NIES-843 |
| 25 | 6721922 | 6722200 | - | NC_019751.1 | Calothrix sp. PCC 6303 |
| 26 | 1636714 | 1636992 | + | NZ_CP060822.1 | Cylindrospermopsis curvispora GIHE-G1 |
| 27 | 6009937 | 6010215 | - | NZ_CP054698.1 | Nostoc edaphicum CCNP1411 |
++ More..
| Neighborhood Conservation Analysis |
* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Representative Chosen(Species): NC_019753.1
| Sr.No. | Domain | Co-occurrence Frequency | No. of species in which domain occurs with smORF | Median distance b/w smORF and domain bearing ORFs | Orientation relative to smORF | PFAM Information |
|---|---|---|---|---|---|---|
| 1 | PF14748.8 | 0.78 | 21 | 1757 | same-strand | Pyrroline-5-carboxylate reductase dimerisation |
| 2 | PF03807.19 | 0.78 | 21 | 1757 | same-strand | NADP oxidoreductase coenzyme F420-dependent |
| 3 | PF04472.14 | 0.78 | 21 | 1049 | same-strand | Cell division protein SepF |
| 4 | PF01168.22 | 0.81 | 22 | -3.0 | same-strand | Alanine racemase, N-terminal domain |
++ More..