Result : EXP01716
| Protein Information |
| Information Type | Description |
|---|---|
| Protein name | EXP01716 |
| NCBI Accession ID | NC_000911.1 |
| Organism | Synechocystis |
| Left | 903627 |
| Right | 903764 |
| Strand | - |
| Nucleotide Sequence | ATGGACTATTTAGAAAAACTGCTCGATAAACTCAGAGAACTGGCCCAGAAGCTGATTGAGGGTTTGCTCGGCCCCCAGGGGGAACCGGAGCCAGAACTAATTCCCATTCCCGTTAACGATCGCCGTTCCCGTCGTTAA |
| Sequence | MDYLEKLLDKLRELAQKLIEGLLGPQGEPEPELIPIPVNDRRSRR |
| Source of smORF | Literature |
| Function | |
| Pubmed ID | 30796087 |
| Domain | |
| Functional Category | Function not yet assigned |
| Uniprot ID | |
| ORF Length (Amino Acid) | 45 |
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| Conservation Analysis |
No. of Species: 27
| Sr.No. | Left Position | Right Position | Strand | NCBI Accession id | Species Name |
|---|---|---|---|---|---|
| 1 | 1324012 | 1324149 | + | NZ_CP047242.1 | Trichormus variabilis 0441 |
| 2 | 1282180 | 1282320 | - | NZ_CP054698.1 | Nostoc edaphicum CCNP1411 |
| 3 | 2278118 | 2278255 | - | NC_014248.1 | 'Nostoc azollae' 0708 |
| 4 | 5445628 | 5445765 | - | NC_019771.1 | Anabaena cylindrica PCC 7122 |
| 5 | 5679358 | 5679498 | - | NC_010628.1 | Nostoc punctiforme PCC 73102 |
| 6 | 5361883 | 5362023 | - | NZ_CP031941.1 | Nostoc sphaeroides |
| 7 | 2901631 | 2901771 | - | NZ_CP024785.1 | Nostoc flagelliforme CCNUN1 |
| 8 | 169014 | 169151 | - | NC_019753.1 | Crinalium epipsammum PCC 9333 |
| 9 | 4488443 | 4488583 | - | NC_019751.1 | Calothrix sp. PCC 6303 |
| 10 | 3429752 | 3429889 | - | NZ_AP014638.1 | Leptolyngbya boryana IAM M-101 |
| 11 | 694800 | 694937 | + | NZ_CP060822.1 | Cylindrospermopsis curvispora GIHE-G1 |
| 12 | 1691192 | 1691335 | + | NC_019748.1 | Stanieria cyanosphaera PCC 7437 |
| 13 | 1936231 | 1936359 | + | NC_009925.1 | Acaryochloris marina MBIC11017 |
| 14 | 1600167 | 1600310 | - | NC_014501.1 | Gloeothece verrucosa PCC 7822 |
| 15 | 4102545 | 4102673 | + | NZ_CP021983.2 | Halomicronema hongdechloris C2206 |
| 16 | 2630793 | 2630930 | + | NC_019776.1 | Cyanobacterium aponinum PCC 10605 |
| 17 | 2255950 | 2256093 | + | NC_019780.1 | Dactylococcopsis salina PCC 8305 |
| 18 | 2946102 | 2946245 | + | NZ_CP042326.1 | Euhalothece natronophila Z-M001 |
| 19 | 2821304 | 2821447 | - | NC_019689.1 | Pleurocapsa sp. PCC 7327 |
| 20 | 6535005 | 6535142 | + | NC_019693.1 | Oscillatoria acuminata PCC 6304 |
| 21 | 1500710 | 1500841 | - | NC_010296.1 | Microcystis aeruginosa NIES-843 |
| 22 | 3427651 | 3427794 | + | NC_019695.1 | Chroococcidiopsis thermalis PCC 7203 |
| 23 | 2776226 | 2776363 | + | NC_019729.1 | Oscillatoria nigro-viridis PCC 7112 |
| 24 | 183485 | 183613 | + | NZ_CP018092.1 | Synechococcus lividus PCC 6715 |
| 25 | 316064 | 316192 | + | NZ_AP018202.1 | Thermostichus vulcanus NIES-2134 |
| 26 | 490001 | 490129 | + | NC_004113.1 | Thermosynechococcus vestitus BP-1 |
| 27 | 3867308 | 3867451 | - | NC_011729.1 | Gloeothece citriformis PCC 7424 |
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| Neighborhood Conservation Analysis |
* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Representative Chosen(Species): NZ_CP047242.1
| Sr.No. | Domain | Co-occurrence Frequency | No. of species in which domain occurs with smORF | Median distance b/w smORF and domain bearing ORFs | Orientation relative to smORF | PFAM Information |
|---|---|---|---|---|---|---|
| 1 | PF01220.21 | 0.96 | 26 | 26.0 | same-strand | Dehydroquinase class II |
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