Result : B2UW37
| Protein Information |
| Information Type | Description |
|---|---|
| Protein name | Nucleoid-associated protein HPSH_00175 |
| NCBI Accession ID | CP001072.2 |
| Organism | Helicobacter pylori (strain Shi470) |
| Left | 33138 |
| Right | 33440 |
| Strand | + |
| Nucleotide Sequence | ATGGATTTTAGTCAATTGGGCGGGTTATTAGACGGCATGAAAAAAGAGTTTTCCCAACTAGAAGAAAAGAATAAAGACACGATCCACACTTCCAAAAGCGGTGGGGGAATGGTGAGCGTGAGTTTTAATGGGGTGGGGGAGTTAGTGGATTTGCAAATTGATGACAGCCTATTAGAAGATAAAGAAGCGATGCAAATCTATTTGATGAGCGCTTTGAATGACGGGTATAAAGCCGTAGAAGAAAACCGCAAAAATTTAGCCTTTAACATGCTGGGGAATTTGGGGAATTTTGCTAAATTGTGA |
| Sequence | MDFSQLGGLLDGMKKEFSQLEEKNKDTIHTSKSGGGMVSVSFNGVGELVDLQIDDSLLEDKEAMQIYLMSALNDGYKAVEENRKNLAFNMLGNLGNFAKL |
| Source of smORF | Swiss-Prot |
| Function | Binds to DNA and alters its conformation. May be involved in regulation of gene expression, nucleoid organization and DNA protection. {ECO:0000255|HAMAP-Rule:MF_00274}. |
| Pubmed ID | |
| Domain | CDD:412410 |
| Functional Category | DNA-binding |
| Uniprot ID | B2UW37 |
| ORF Length (Amino Acid) | 100 |
++ More..
| Conservation Analysis |
No. of Species: 25
| Sr.No. | Left Position | Right Position | Strand | NCBI Accession id | Species Name |
|---|---|---|---|---|---|
| 1 | 33110 | 33403 | + | NC_017379.1 | Helicobacter pylori Puno135 |
| 2 | 46652 | 46945 | + | NC_008229.1 | Helicobacter acinonychis str. Sheeba |
| 3 | 22090 | 22383 | - | NC_017735.1 | Helicobacter cetorum MIT 99-5656 |
| 4 | 493981 | 494226 | - | NC_014810.2 | Helicobacter felis ATCC 49179 |
| 5 | 487372 | 487638 | + | NZ_CP014991.1 | Helicobacter himalayensis |
| 6 | 947873 | 948181 | - | NZ_CP063087.1 | Helicobacter winghamensis |
| 7 | 1115516 | 1115761 | - | NZ_LS483446.1 | Helicobacter mustelae |
| 8 | 328396 | 328662 | + | NC_004917.1 | Helicobacter hepaticus ATCC 51449 |
| 9 | 762850 | 763137 | - | NZ_LN907858.1 | Helicobacter typhlonius |
| 10 | 1594400 | 1594648 | - | NC_005090.1 | Wolinella succinogenes DSM 1740 |
| 11 | 8659 | 8970 | - | NZ_CP021886.1 | Helicobacter apodemus |
| 12 | 126641 | 126946 | + | NC_014935.1 | Nitratifractor salsuginis DSM 16511 |
| 13 | 538968 | 539252 | - | NZ_AP018676.1 | Helicobacter cinaedi |
| 14 | 1720173 | 1720439 | - | NZ_CP012541.1 | Campylobacter concisus |
| 15 | 1504094 | 1504369 | - | NZ_CP012547.1 | Campylobacter pinnipediorum subsp. pinnipediorum |
| 16 | 503347 | 503604 | + | NZ_CP053837.1 | Aliarcobacter faecis |
| 17 | 785620 | 785877 | + | NZ_CP054051.1 | Aliarcobacter cibarius |
| 18 | 730938 | 731231 | + | NZ_CP063079.1 | Campylobacter peloridis |
| 19 | 96331 | 96600 | + | NZ_CP012543.1 | Campylobacter rectus |
| 20 | 1694163 | 1694447 | + | NZ_CP019684.1 | Campylobacter sputorum bv. paraureolyticus LMG 11764 |
| 21 | 1818855 | 1819136 | - | NZ_CP053826.1 | Campylobacter curvus |
| 22 | 240239 | 240556 | - | NZ_CP012196.1 | Campylobacter gracilis |
| 23 | 1647698 | 1647955 | - | NZ_CP027432.2 | Caminibacter pacificus |
| 24 | 1576518 | 1576778 | - | NC_012115.1 | Nautilia profundicola AmH |
| 25 | 466483 | 466740 | + | NZ_CP035928.1 | Malaciobacter pacificus |
++ More..
| Neighborhood Conservation Analysis |
* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Representative Chosen(Species): NC_014810.2
| Sr.No. | Domain | Co-occurrence Frequency | No. of species in which domain occurs with smORF | Median distance b/w smORF and domain bearing ORFs | Orientation relative to smORF | PFAM Information |
|---|---|---|---|---|---|---|
| 1 | PF02261.18 | 0.92 | 23 | 41 | same-strand | Aspartate decarboxylase |
| 2 | PF13180.8 | 0.64 | 16 | 0.0 | same-strand | PDZ domain |
| 3 | PF00348.19 | 0.84 | 21 | 1060 | same-strand | Polyprenyl synthetase |
++ More..