Result : EXP01641
| Protein Information |
| Information Type | Description |
|---|---|
| Protein name | EXP01641 |
| NCBI Accession ID | BA000022.2 |
| Organism | Synechocystis sp. PCC 6803 |
| Left | 261863 |
| Right | 262060 |
| Strand | + |
| Nucleotide Sequence | ATGACGATTGAAATAGGTCAAAAAGTTAAGGTTTACCGTCTGCGGGACCGGGTTTCCCCCGATGTGGTGGGTAAACTAGGTAAAGTCGGTGTTGTTAAGGATTTTAAAATGACCGATGGCAGTGGCATTGGAGCGGTGGTTTCCTTTGATGACCGCACCGCCACCTGGTTTTTTGAGGATGAGCTCAAAGCGATTTAA |
| Sequence | MTIEIGQKVKVYRLRDRVSPDVVGKLGKVGVVKDFKMTDGSGIGAVVSFDDRTATWFFEDELKAI |
| Source of smORF | Protein-level |
| Function | The ORF matches to the profile of pfam11061. Profile Description: Protein of unknown function (DUF2862). This family of proteins has no known function. |
| Pubmed ID | 30796087 |
| Domain | CDD:402579 |
| Functional Category | Conserved domain based functional assignment |
| Uniprot ID | |
| ORF Length (Amino Acid) | 65 |
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| Conservation Analysis |
No. of Species: 28
| Sr.No. | Left Position | Right Position | Strand | NCBI Accession id | Species Name |
|---|---|---|---|---|---|
| 1 | 1976636 | 1976827 | + | NC_010296.1 | Microcystis aeruginosa NIES-843 |
| 2 | 3393344 | 3393538 | + | NC_014501.1 | Gloeothece verrucosa PCC 7822 |
| 3 | 1363304 | 1363498 | - | NC_011729.1 | Gloeothece citriformis PCC 7424 |
| 4 | 45319 | 45513 | + | NC_019689.1 | Pleurocapsa sp. PCC 7327 |
| 5 | 1001807 | 1002019 | + | NZ_CP042326.1 | Euhalothece natronophila Z-M001 |
| 6 | 1615931 | 1616128 | - | NC_019753.1 | Crinalium epipsammum PCC 9333 |
| 7 | 1748926 | 1749135 | + | NC_019780.1 | Dactylococcopsis salina PCC 8305 |
| 8 | 5895513 | 5895704 | + | NC_019695.1 | Chroococcidiopsis thermalis PCC 7203 |
| 9 | 2561921 | 2562115 | + | NZ_CP060822.1 | Cylindrospermopsis curvispora GIHE-G1 |
| 10 | 2953560 | 2953757 | - | NC_019748.1 | Stanieria cyanosphaera PCC 7437 |
| 11 | 5289509 | 5289700 | + | NZ_CP054698.1 | Nostoc edaphicum CCNP1411 |
| 12 | 5737589 | 5737747 | - | NZ_CP031941.1 | Nostoc sphaeroides |
| 13 | 5989214 | 5989405 | + | NZ_CP024785.1 | Nostoc flagelliforme CCNUN1 |
| 14 | 2198684 | 2198860 | + | NZ_CP018092.1 | Synechococcus lividus PCC 6715 |
| 15 | 5546581 | 5546772 | - | NC_019771.1 | Anabaena cylindrica PCC 7122 |
| 16 | 5474139 | 5474333 | - | NZ_CP047242.1 | Trichormus variabilis 0441 |
| 17 | 5631892 | 5632080 | - | NC_010628.1 | Nostoc punctiforme PCC 73102 |
| 18 | 16990 | 17157 | + | NC_014248.1 | 'Nostoc azollae' 0708 |
| 19 | 6596503 | 6596697 | + | NC_019751.1 | Calothrix sp. PCC 6303 |
| 20 | 800936 | 801112 | + | NZ_AP018202.1 | Thermostichus vulcanus NIES-2134 |
| 21 | 523903 | 524079 | + | NC_004113.1 | Thermosynechococcus vestitus BP-1 |
| 22 | 3903980 | 3904180 | - | NC_019776.1 | Cyanobacterium aponinum PCC 10605 |
| 23 | 7176005 | 7176202 | + | NC_019693.1 | Oscillatoria acuminata PCC 6304 |
| 24 | 6116191 | 6116388 | - | NC_009925.1 | Acaryochloris marina MBIC11017 |
| 25 | 345142 | 345342 | + | NZ_CP021983.2 | Halomicronema hongdechloris C2206 |
| 26 | 1385630 | 1385794 | + | NC_019675.1 | Cyanobium gracile PCC 6307 |
| 27 | 3547373 | 3547573 | - | NZ_AP014638.1 | Leptolyngbya boryana IAM M-101 |
| 28 | 1296903 | 1297103 | - | NC_019729.1 | Oscillatoria nigro-viridis PCC 7112 |
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| Neighborhood Conservation Analysis |
* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Representative Chosen(Species): NC_010296.1
| Sr.No. | Domain | Co-occurrence Frequency | No. of species in which domain occurs with smORF | Median distance b/w smORF and domain bearing ORFs | Orientation relative to smORF | PFAM Information |
|---|---|---|---|---|---|---|
| 1 | PF17886.3 | 0.86 | 24 | 78.0 | same-strand | HSP20-like domain found in ArsA |
| 2 | PF01040.20 | 0.75 | 21 | 1280 | same-strand | UbiA prenyltransferase family |
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