Result : EXP01596
| Protein Information |
| Information Type | Description |
|---|---|
| Protein name | EXP01596 |
| NCBI Accession ID | NC_017548.1 |
| Organism | Pseudomonas aeruginosa M18 |
| Left | 2123128 |
| Right | 2123349 |
| Strand | - |
| Nucleotide Sequence | ATGATCAAGCGGATGCTACCCGCCCTCCTCCTCGCCGTAGGCCTCGGCGCCCTCGCGGGTTGTTCCAGCCCTACCGTGATCACCCTCAACGACGGACGTGAAATCCAGGCCGTAGACACCCCTTCCTATGACGAGGATTCCGGCTTCTACGAGTTCGAACAGCTCGACGGCAAGCGCGCCCGCGTGAACAAGGACCAGGTCCGCACCGTCAAGGAACTCTGA |
| Sequence | MIKRMLPALLLAVGLGALAGCSSPTVITLNDGREIQAVDTPSYDEDSGFYEFEQLDGKRARVNKDQVRTVKEL |
| Source of smORF | Protein-level |
| Function | The ORF matches to the profile of cl05512. Profile Description: Bacterial protein of unknown function (DUF903). Members of this family are exclusively lipoproteins of small size, including YgdI and YgdR from E. coli K-12. |
| Pubmed ID | 30796087 |
| Domain | CDD:414440 |
| Functional Category | Conserved domain based functional assignment |
| Uniprot ID | |
| ORF Length (Amino Acid) | 73 |
++ More..
| Conservation Analysis |
No. of Species: 51
| Sr.No. | Left Position | Right Position | Strand | NCBI Accession id | Species Name |
|---|---|---|---|---|---|
| 1 | 3394816 | 3395037 | + | NC_002516.2 | Pseudomonas aeruginosa PAO1 |
| 2 | 2754602 | 2754823 | + | NC_002516.2 | Pseudomonas aeruginosa PAO1 |
| 3 | 1744803 | 1745024 | + | NZ_CP031146.1 | Pseudomonas plecoglossicida |
| 4 | 2516747 | 2516965 | + | NZ_CP031146.1 | Pseudomonas plecoglossicida |
| 5 | 1599034 | 1599255 | - | NZ_CP009533.1 | Pseudomonas rhizosphaerae |
| 6 | 4786103 | 4786324 | + | NZ_CP061079.1 | Pseudomonas chlororaphis |
| 7 | 4506285 | 4506506 | + | NZ_CP048833.1 | Pseudomonas multiresinivorans |
| 8 | 3762462 | 3762683 | + | NZ_AP014862.1 | Pseudomonas furukawaii |
| 9 | 3942583 | 3942804 | + | NZ_CP047698.1 | Pseudomonas knackmussii |
| 10 | 1991818 | 1992039 | - | NZ_CP068551.1 | Pseudomonas khazarica |
| 11 | 2221862 | 2222083 | + | NZ_CP048810.1 | Pseudomonas bijieensis |
| 12 | 5181930 | 5182151 | + | NZ_CP051487.1 | Pseudomonas umsongensis |
| 13 | 2067995 | 2068216 | - | NZ_CP043311.1 | Pseudomonas lalkuanensis |
| 14 | 4857869 | 4858090 | + | NZ_LS999205.1 | Pseudomonas protegens CHA0 |
| 15 | 2109894 | 2110115 | - | NZ_CP054205.1 | Pseudomonas rhodesiae |
| 16 | 1963138 | 1963359 | - | NZ_CP018420.1 | Pseudomonas veronii |
| 17 | 62884 | 63105 | + | NZ_CP014205.2 | Pseudomonas glycinae |
| 18 | 5529772 | 5529993 | - | NZ_CP014262.1 | Pseudomonas corrugata |
| 19 | 1969512 | 1969733 | - | NZ_CP070503.1 | Pseudomonas atacamensis |
| 20 | 1974380 | 1974601 | - | NZ_CP034725.1 | Pseudomonas brassicacearum |
| 21 | 1939128 | 1939349 | - | NZ_CP035088.1 | Pseudomonas viciae |
| 22 | 4594449 | 4594670 | + | NZ_CP062253.1 | Pseudomonas gozinkensis |
| 23 | 4205538 | 4205759 | - | NZ_CP070505.1 | Pseudomonas toyotomiensis |
| 24 | 4383038 | 4383259 | + | NZ_CP029608.1 | Pseudomonas kribbensis |
| 25 | 4636089 | 4636310 | + | NZ_CP062252.1 | Pseudomonas allokribbensis |
| 26 | 1723152 | 1723373 | + | NZ_CP005960.1 | Pseudomonas mandelii JR-1 |
| 27 | 3341117 | 3341338 | + | NZ_CP060009.1 | Pseudomonas sediminis |
| 28 | 3165375 | 3165596 | + | NZ_CP013124.1 | Pseudomonas mendocina S5.2 |
| 29 | 3504884 | 3505108 | + | NZ_CP007039.1 | Pseudomonas cichorii JBC1 |
| 30 | 2605826 | 2606050 | - | NC_004578.1 | Pseudomonas syringae pv. tomato str. DC3000 |
| 31 | 3592987 | 3593211 | + | NZ_CP067022.1 | Pseudomonas cannabina pv. alisalensis |
| 32 | 1570846 | 1571067 | - | NZ_CP014870.1 | Pseudomonas silesiensis |
| 33 | 3635151 | 3635375 | + | NZ_CP068034.2 | Pseudomonas syringae |
| 34 | 2416526 | 2416750 | - | NZ_CP042804.1 | Pseudomonas amygdali pv. tabaci str. ATCC 11528 |
| 35 | 4024632 | 4024853 | + | NC_008027.1 | Pseudomonas entomophila L48 |
| 36 | 4815325 | 4815543 | + | NC_008027.1 | Pseudomonas entomophila L48 |
| 37 | 2923953 | 2924174 | + | NZ_LR215729.2 | Pseudomonas marincola |
| 38 | 3771862 | 3772083 | + | NZ_CP024159.1 | Pseudomonas mosselii |
| 39 | 4682836 | 4683054 | + | NZ_CP024159.1 | Pseudomonas mosselii |
| 40 | 924001 | 924222 | - | NZ_CP009365.1 | Pseudomonas soli |
| 41 | 6137788 | 6138006 | - | NZ_CP009365.1 | Pseudomonas soli |
| 42 | 3990944 | 3991165 | + | NZ_CP071706.1 | Pseudomonas donghuensis |
| 43 | 4780248 | 4780466 | + | NZ_CP071706.1 | Pseudomonas donghuensis |
| 44 | 1932838 | 1933059 | - | NZ_CP022562.1 | Pseudomonas monteilii |
| 45 | 4870049 | 4870240 | + | NZ_CP022562.1 | Pseudomonas monteilii |
| 46 | 1869061 | 1869282 | - | NZ_CP046621.1 | Pseudomonas alkylphenolica |
| 47 | 1085946 | 1086164 | - | NZ_CP046621.1 | Pseudomonas alkylphenolica |
| 48 | 4238397 | 4238618 | + | NC_021505.1 | Pseudomonas putida NBRC 14164 |
| 49 | 961601 | 961819 | - | NC_021505.1 | Pseudomonas putida NBRC 14164 |
| 50 | 2045052 | 2045273 | - | NZ_CP014158.1 | Pseudomonas citronellolis |
| 51 | 1860893 | 1861114 | - | NZ_CP023272.1 | Pseudomonas lurida |
| 52 | 1823923 | 1824144 | - | NZ_CP027723.1 | Pseudomonas orientalis |
| 53 | 2060697 | 2060918 | - | NZ_CP027756.1 | Pseudomonas synxantha |
| 54 | 2009072 | 2009293 | - | NZ_CP056030.1 | Pseudomonas eucalypticola |
| 55 | 1528940 | 1529161 | - | NZ_CP062158.2 | Pseudomonas lundensis |
| 56 | 1824902 | 1825123 | - | NZ_AP022642.1 | Pseudomonas otitidis |
| 57 | 3222772 | 3222993 | + | NZ_CP029822.1 | Entomomonas moraniae |
| 58 | 4405146 | 4405334 | + | NZ_LR134302.1 | Achromobacter spanius |
| 59 | 4589055 | 4589243 | - | NZ_CP038034.1 | Achromobacter insolitus |
| 60 | 757264 | 757452 | + | NZ_CP038034.1 | Achromobacter insolitus |
| 61 | 189680 | 189868 | + | NZ_CP053986.1 | Achromobacter denitrificans |
++ More..
| Neighborhood Conservation Analysis |
* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Representative Chosen(Species): NC_002516.2
| Sr.No. | Domain | Co-occurrence Frequency | No. of species in which domain occurs with smORF | Median distance b/w smORF and domain bearing ORFs | Orientation relative to smORF | PFAM Information |
|---|---|---|---|---|---|---|
| 1 | PF03453.19 | 0.92 | 47 | 1282 | opposite-strand | MoeA N-terminal region (domain I and II) |
| 2 | PF00994.26 | 0.92 | 47 | 763.5 | opposite-strand | Probable molybdopterin binding domain |
| 3 | PF03454.17 | 0.92 | 47 | 1282 | opposite-strand | MoeA C-terminal region (domain IV) |
| 4 | PF12804.9 | 0.75 | 38 | 80.0 | same-strand | MobA-like NTP transferase domain |
++ More..