Result : EXP01592
| Protein Information |
| Information Type | Description |
|---|---|
| Protein name | EXP01592 |
| NCBI Accession ID | NC_017548.1 |
| Organism | Pseudomonas aeruginosa M18 |
| Left | 5025123 |
| Right | 5025374 |
| Strand | - |
| Nucleotide Sequence | TTGAGGTTGAGCATGCAGGCCGAAGACGTTAAGAGCCTTCTCCAGGAAAAACTCCCCGGCACCCAGGTGGAAGTCGAGGGCGAAGGGTGCAATTTCCAACTGAATCTGATCAGCGACGAACTGGCCGGCCAGAGCCCGGTCAAGCGTCAGCAGCAGGTCTACGCCCATTTGAACGCCTGGATCGCCGATGGCAGCATCCATGCCGTCACCATGAAATTCTTCAGCCGCGCCGCCTGGGCCGAGCGTTCCTGA |
| Sequence | LRLSMQAEDVKSLLQEKLPGTQVEVEGEGCNFQLNLISDELAGQSPVKRQQQVYAHLNAWIADGSIHAVTMKFFSRAAWAERS |
| Source of smORF | Protein-level |
| Function | The ORF matches to the profile of cl00386. Profile Description: BolA-like protein. transcriptional regulator BolA; Provisional |
| Pubmed ID | 30796087 |
| Domain | CDD:412350 |
| Functional Category | Conserved domain based functional assignment |
| Uniprot ID | |
| ORF Length (Amino Acid) | 83 |
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| Conservation Analysis |
No. of Species: 63
| Sr.No. | Left Position | Right Position | Strand | NCBI Accession id | Species Name |
|---|---|---|---|---|---|
| 1 | 4985491 | 4985742 | - | NC_002516.2 | Pseudomonas aeruginosa PAO1 |
| 2 | 1048518 | 1048769 | + | NZ_AP014862.1 | Pseudomonas furukawaii |
| 3 | 1000969 | 1001220 | + | NZ_CP043311.1 | Pseudomonas lalkuanensis |
| 4 | 1292557 | 1292781 | + | NZ_AP022642.1 | Pseudomonas otitidis |
| 5 | 6218974 | 6219213 | + | NZ_CP009365.1 | Pseudomonas soli |
| 6 | 1073576 | 1073815 | + | NZ_CP024159.1 | Pseudomonas mosselii |
| 7 | 1083192 | 1083443 | + | NZ_CP034725.1 | Pseudomonas brassicacearum |
| 8 | 5934756 | 5934995 | - | NZ_CP048833.1 | Pseudomonas multiresinivorans |
| 9 | 3363289 | 3363528 | + | NZ_CP070505.1 | Pseudomonas toyotomiensis |
| 10 | 5073481 | 5073732 | - | NZ_CP070503.1 | Pseudomonas atacamensis |
| 11 | 1034451 | 1034702 | + | NZ_CP051487.1 | Pseudomonas umsongensis |
| 12 | 4033982 | 4034221 | - | NZ_CP013124.1 | Pseudomonas mendocina S5.2 |
| 13 | 4133667 | 4133918 | - | NZ_CP014205.2 | Pseudomonas glycinae |
| 14 | 4582634 | 4582885 | + | NZ_CP014262.1 | Pseudomonas corrugata |
| 15 | 3099827 | 3100078 | - | NZ_CP048810.1 | Pseudomonas bijieensis |
| 16 | 4744555 | 4744806 | - | NZ_CP046621.1 | Pseudomonas alkylphenolica |
| 17 | 1267348 | 1267587 | + | NZ_CP014158.1 | Pseudomonas citronellolis |
| 18 | 1071426 | 1071677 | + | NZ_LS999205.1 | Pseudomonas protegens CHA0 |
| 19 | 1130634 | 1130885 | + | NZ_CP022562.1 | Pseudomonas monteilii |
| 20 | 1018406 | 1018645 | + | NZ_CP068551.1 | Pseudomonas khazarica |
| 21 | 1218451 | 1218702 | + | NZ_CP071706.1 | Pseudomonas donghuensis |
| 22 | 1154510 | 1154749 | + | NC_008027.1 | Pseudomonas entomophila L48 |
| 23 | 1075653 | 1075904 | + | NZ_CP062253.1 | Pseudomonas gozinkensis |
| 24 | 4927840 | 4928091 | - | NC_021505.1 | Pseudomonas putida NBRC 14164 |
| 25 | 3932766 | 3933017 | - | NZ_CP062158.2 | Pseudomonas lundensis |
| 26 | 4590420 | 4590671 | + | NZ_CP031146.1 | Pseudomonas plecoglossicida |
| 27 | 4207713 | 4207952 | - | NZ_CP060009.1 | Pseudomonas sediminis |
| 28 | 4809532 | 4809771 | - | NZ_CP047698.1 | Pseudomonas knackmussii |
| 29 | 2837066 | 2837317 | - | NZ_CP005960.1 | Pseudomonas mandelii JR-1 |
| 30 | 5650633 | 5650884 | - | NZ_CP014870.1 | Pseudomonas silesiensis |
| 31 | 4893634 | 4893873 | - | NZ_CP068034.2 | Pseudomonas syringae |
| 32 | 4958937 | 4959176 | - | NZ_CP042804.1 | Pseudomonas amygdali pv. tabaci str. ATCC 11528 |
| 33 | 1051046 | 1051297 | + | NZ_CP029608.1 | Pseudomonas kribbensis |
| 34 | 1036846 | 1037097 | + | NZ_CP062252.1 | Pseudomonas allokribbensis |
| 35 | 5009977 | 5010216 | - | NC_004578.1 | Pseudomonas syringae pv. tomato str. DC3000 |
| 36 | 1131854 | 1132093 | + | NZ_CP027756.1 | Pseudomonas synxantha |
| 37 | 1067001 | 1067240 | + | NZ_CP018420.1 | Pseudomonas veronii |
| 38 | 983162 | 983401 | + | NZ_CP010896.1 | Pseudomonas simiae |
| 39 | 1039217 | 1039441 | + | NZ_CP035088.1 | Pseudomonas viciae |
| 40 | 838326 | 838550 | + | NZ_CP009533.1 | Pseudomonas rhizosphaerae |
| 41 | 1204626 | 1204865 | + | NZ_CP054205.1 | Pseudomonas rhodesiae |
| 42 | 3580691 | 3580936 | - | NZ_CP012676.1 | Pseudomonas versuta |
| 43 | 4994319 | 4994564 | - | NZ_CP049044.1 | Pseudomonas psychrophila |
| 44 | 1006521 | 1006760 | + | NZ_CP023272.1 | Pseudomonas lurida |
| 45 | 787626 | 787865 | + | NZ_CP012400.2 | Pseudomonas yamanorum |
| 46 | 3894452 | 3894703 | - | NZ_LR215729.2 | Pseudomonas marincola |
| 47 | 4990427 | 4990666 | - | NZ_CP007039.1 | Pseudomonas cichorii JBC1 |
| 48 | 978423 | 978662 | + | NZ_CP027723.1 | Pseudomonas orientalis |
| 49 | 5417699 | 5417938 | - | NZ_CP056030.1 | Pseudomonas eucalypticola |
| 50 | 4829130 | 4829354 | - | NZ_CP067022.1 | Pseudomonas cannabina pv. alisalensis |
| 51 | 1034714 | 1034977 | + | NZ_CP061079.1 | Pseudomonas chlororaphis |
| 52 | 1135364 | 1135603 | + | NZ_CP011835.1 | Azotobacter chroococcum |
| 53 | 1538905 | 1539144 | - | NZ_CP045302.1 | Azotobacter salinestris |
| 54 | 1253912 | 1254151 | + | NC_012560.1 | Azotobacter vinelandii DJ |
| 55 | 367131 | 367370 | + | NZ_CP029822.1 | Entomomonas moraniae |
| 56 | 5040021 | 5040263 | - | NZ_CP048878.1 | Spartinivicinus ruber |
| 57 | 420254 | 420493 | + | NZ_CP012362.1 | Oblitimonas alkaliphila |
| 58 | 3026110 | 3026349 | - | NZ_AP014545.1 | Amphritea japonica ATCC BAA-1530 |
| 59 | 1868851 | 1869087 | + | NZ_CP054301.1 | Marinomonas primoryensis |
| 60 | 2144458 | 2144667 | - | NC_015559.1 | Marinomonas posidonica IVIA-Po-181 |
| 61 | 2591470 | 2591700 | - | NZ_CP011797.1 | Reinekea forsetii |
| 62 | 1913924 | 1914160 | + | NZ_CP061081.1 | Marinomonas arctica |
| 63 | 309525 | 309761 | - | NZ_CP070273.1 | Marinomonas foliarum |
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| Neighborhood Conservation Analysis |
* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Representative Chosen(Species): NC_002516.2
| Sr.No. | Domain | Co-occurrence Frequency | No. of species in which domain occurs with smORF | Median distance b/w smORF and domain bearing ORFs | Orientation relative to smORF | PFAM Information |
|---|---|---|---|---|---|---|
| 1 | PF00155.23 | 0.92 | 58 | 3516.0 | same-strand | Aminotransferase class I and II |
| 2 | PF00815.22 | 1.0 | 63 | 2176 | same-strand | Histidinol dehydrogenase |
| 3 | PF01634.20 | 1.0 | 63 | 1414 | same-strand | ATP phosphoribosyltransferase |
| 4 | PF00275.22 | 1.0 | 63 | 23 | same-strand | EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) |
| 5 | PF13466.8 | 0.92 | 58 | 115.0 | same-strand | STAS domain |
| 6 | PF05494.14 | 1.0 | 63 | 417 | same-strand | MlaC protein |
| 7 | PF02470.22 | 0.98 | 62 | 1076.0 | same-strand | MlaD protein |
| 8 | PF02405.18 | 0.98 | 62 | 1544.5 | same-strand | Permease MlaE |
| 9 | PF00005.29 | 0.98 | 62 | 2341.5 | same-strand | ABC transporter |
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