Result : EXP01559
| Protein Information |
| Information Type | Description |
|---|---|
| Protein name | EXP01559 |
| NCBI Accession ID | BA000022.2 |
| Organism | Synechocystis sp. PCC 6803 |
| Left | 1242765 |
| Right | 1242989 |
| Strand | - |
| Nucleotide Sequence | ATGAGCAATATTCAAGAAAAAATCGAACAGGAGCTAGCCAACGCTAGACAAGTTTGCAGTACCGATGAAGCCTCTCCGGCGGAGTGCGCTGCGGCCTGGGATGCGGTGGAAGAGCTAGAAGCGGAAGCCGCCCACCAACGTCAACAACATCCCACCCAAACTACCCTGGAAAAGTTCTGTGACGAAAACCCCGACGCTGCTGAGTGCCGCATTTACGACGACTAG |
| Sequence | MSNIQEKIEQELANARQVCSTDEASPAECAAAWDAVEELEAEAAHQRQQHPTQTTLEKFCDENPDAAECRIYDD |
| Source of smORF | Protein-level |
| Function | The ORF matches to the profile of cl14670. Profile Description: CP12 domain. CP12 gene family protein; Provisional |
| Pubmed ID | 30796087 |
| Domain | CDD:417486 |
| Functional Category | Conserved domain based functional assignment |
| Uniprot ID | |
| ORF Length (Amino Acid) | 74 |
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| Conservation Analysis |
No. of Species: 28
| Sr.No. | Left Position | Right Position | Strand | NCBI Accession id | Species Name |
|---|---|---|---|---|---|
| 1 | 3895405 | 3895629 | + | NC_010296.1 | Microcystis aeruginosa NIES-843 |
| 2 | 4433948 | 4434172 | - | NC_019689.1 | Pleurocapsa sp. PCC 7327 |
| 3 | 3399561 | 3399785 | + | NC_014501.1 | Gloeothece verrucosa PCC 7822 |
| 4 | 4519618 | 4519842 | - | NC_011729.1 | Gloeothece citriformis PCC 7424 |
| 5 | 3697976 | 3698200 | + | NC_019748.1 | Stanieria cyanosphaera PCC 7437 |
| 6 | 2514761 | 2514988 | - | NC_009925.1 | Acaryochloris marina MBIC11017 |
| 7 | 1162964 | 1163188 | - | NC_019776.1 | Cyanobacterium aponinum PCC 10605 |
| 8 | 1803324 | 1803560 | + | NC_019729.1 | Oscillatoria nigro-viridis PCC 7112 |
| 9 | 658161 | 658385 | - | NZ_CP042326.1 | Euhalothece natronophila Z-M001 |
| 10 | 1517500 | 1517724 | + | NC_019780.1 | Dactylococcopsis salina PCC 8305 |
| 11 | 4784473 | 4784694 | - | NC_019693.1 | Oscillatoria acuminata PCC 6304 |
| 12 | 6079262 | 6079486 | - | NZ_AP014638.1 | Leptolyngbya boryana IAM M-101 |
| 13 | 2420006 | 2420221 | + | NZ_AP014638.1 | Leptolyngbya boryana IAM M-101 |
| 14 | 1497859 | 1498086 | + | NC_019753.1 | Crinalium epipsammum PCC 9333 |
| 15 | 846081 | 846326 | - | NC_010628.1 | Nostoc punctiforme PCC 73102 |
| 16 | 6560934 | 6561179 | - | NZ_CP024785.1 | Nostoc flagelliforme CCNUN1 |
| 17 | 1327873 | 1328061 | - | NZ_CP054698.1 | Nostoc edaphicum CCNP1411 |
| 18 | 2586279 | 2586506 | + | NZ_CP018092.1 | Synechococcus lividus PCC 6715 |
| 19 | 112162 | 112407 | + | NZ_CP031941.1 | Nostoc sphaeroides |
| 20 | 1240766 | 1240987 | + | NZ_CP021983.2 | Halomicronema hongdechloris C2206 |
| 21 | 1901165 | 1901392 | + | NC_004113.1 | Thermosynechococcus vestitus BP-1 |
| 22 | 3961970 | 3962191 | + | NC_019695.1 | Chroococcidiopsis thermalis PCC 7203 |
| 23 | 1779678 | 1779905 | + | NZ_AP018202.1 | Thermostichus vulcanus NIES-2134 |
| 24 | 2570794 | 2571030 | + | NZ_CP047242.1 | Trichormus variabilis 0441 |
| 25 | 6377226 | 6377450 | + | NC_019751.1 | Calothrix sp. PCC 6303 |
| 26 | 4633948 | 4634187 | + | NC_019771.1 | Anabaena cylindrica PCC 7122 |
| 27 | 4799101 | 4799319 | - | NC_019771.1 | Anabaena cylindrica PCC 7122 |
| 28 | 1632852 | 1633094 | - | NC_014248.1 | 'Nostoc azollae' 0708 |
| 29 | 3227877 | 3228119 | - | NZ_CP060822.1 | Cylindrospermopsis curvispora GIHE-G1 |
| 30 | 524937 | 525164 | - | NC_022600.1 | Gloeobacter kilaueensis JS1 |
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| Neighborhood Conservation Analysis |
* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Representative Chosen(Species): NC_010296.1
| Sr.No. | Domain | Co-occurrence Frequency | No. of species in which domain occurs with smORF | Median distance b/w smORF and domain bearing ORFs | Orientation relative to smORF | PFAM Information |
|---|---|---|---|---|---|---|
| 1 | PF11375.10 | 0.68 | 19 | 252 | same-strand | Protein of unknown function (DUF3177) |
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