Result : EXP01540
| Protein Information |
| Information Type | Description |
|---|---|
| Protein name | EXP01540 |
| NCBI Accession ID | BA000022.2 |
| Organism | Synechocystis sp. PCC 6803 |
| Left | 1975575 |
| Right | 1975874 |
| Strand | - |
| Nucleotide Sequence | GTGACCATTACCTTTGTTAAAGAGCAGAAGGATATTGTTGTGGCCCAGGGTGCCAACCTACGGGAAAAGGCCCTGCAGAATGGCGTTGATATTTATACCTTGAAAGGAAAACTGATGAACTGCGGAGGCTACGGCCAATGTGGCACTTGCATCGTGGAAATCACAGCGGGTATGGAAAATCTTTCCCCGAAAACCGACTTTGAAAATAGGGTATTGCGCAAAAAGCCCGACAATTTCCGTCTCGCCTGTCAAACCTTGGTCAATGGGCCGGTGAGTGTGAACACCAAACCCAAAGGCTAG |
| Sequence | VTITFVKEQKDIVVAQGANLREKALQNGVDIYTLKGKLMNCGGYGQCGTCIVEITAGMENLSPKTDFENRVLRKKPDNFRLACQTLVNGPVSVNTKPKG |
| Source of smORF | Protein-level |
| Function | The ORF matches to the profile of cl00159. Profile Description: N/A. The 2Fe-2S ferredoxin family have a general core structure consisting of beta(2)-alpha-beta(2) which a beta-grasp type fold. The domain is around one hundred amino acids with four conserved cysteine residues to which the 2Fe-2S cluster is ligated. This cluster appears within sarcosine oxidase proteins. |
| Pubmed ID | 30796087 |
| Domain | CDD:412190 |
| Functional Category | Conserved domain based functional assignment |
| Uniprot ID | |
| ORF Length (Amino Acid) | 99 |
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| Conservation Analysis |
No. of Species: 29
| Sr.No. | Left Position | Right Position | Strand | NCBI Accession id | Species Name |
|---|---|---|---|---|---|
| 1 | 2440317 | 2440571 | - | NC_014501.1 | Gloeothece verrucosa PCC 7822 |
| 2 | 3891959 | 3892213 | + | NC_011729.1 | Gloeothece citriformis PCC 7424 |
| 3 | 677021 | 677317 | - | NC_019776.1 | Cyanobacterium aponinum PCC 10605 |
| 4 | 3828989 | 3829285 | + | NC_019689.1 | Pleurocapsa sp. PCC 7327 |
| 5 | 3301890 | 3302186 | + | NC_019748.1 | Stanieria cyanosphaera PCC 7437 |
| 6 | 4164779 | 4165042 | - | NC_010296.1 | Microcystis aeruginosa NIES-843 |
| 7 | 1899740 | 1900036 | - | NC_019753.1 | Crinalium epipsammum PCC 9333 |
| 8 | 2369036 | 2369335 | - | NZ_CP018092.1 | Synechococcus lividus PCC 6715 |
| 9 | 4965876 | 4966154 | - | NC_019729.1 | Oscillatoria nigro-viridis PCC 7112 |
| 10 | 1473010 | 1473315 | - | NZ_AP018202.1 | Thermostichus vulcanus NIES-2134 |
| 11 | 1595463 | 1595768 | - | NC_004113.1 | Thermosynechococcus vestitus BP-1 |
| 12 | 4824517 | 4824846 | - | NZ_AP014638.1 | Leptolyngbya boryana IAM M-101 |
| 13 | 4870124 | 4870381 | + | NC_019771.1 | Anabaena cylindrica PCC 7122 |
| 14 | 518571 | 518828 | - | NC_014248.1 | 'Nostoc azollae' 0708 |
| 15 | 6290867 | 6291148 | + | NC_019695.1 | Chroococcidiopsis thermalis PCC 7203 |
| 16 | 1612919 | 1613176 | - | NZ_CP054698.1 | Nostoc edaphicum CCNP1411 |
| 17 | 347416 | 347712 | + | NC_010628.1 | Nostoc punctiforme PCC 73102 |
| 18 | 176445 | 176702 | + | NZ_CP031941.1 | Nostoc sphaeroides |
| 19 | 554466 | 554762 | - | NZ_CP047242.1 | Trichormus variabilis 0441 |
| 20 | 1676877 | 1677173 | - | NZ_CP060822.1 | Cylindrospermopsis curvispora GIHE-G1 |
| 21 | 6505011 | 6505268 | - | NZ_CP024785.1 | Nostoc flagelliforme CCNUN1 |
| 22 | 4432059 | 4432355 | + | NC_019751.1 | Calothrix sp. PCC 6303 |
| 23 | 1808344 | 1808622 | + | NC_019693.1 | Oscillatoria acuminata PCC 6304 |
| 24 | 524822 | 525070 | + | NC_019780.1 | Dactylococcopsis salina PCC 8305 |
| 25 | 617621 | 617977 | - | NZ_CP021983.2 | Halomicronema hongdechloris C2206 |
| 26 | 2086389 | 2086697 | - | NZ_CP042326.1 | Euhalothece natronophila Z-M001 |
| 27 | 2015490 | 2015789 | - | NC_009925.1 | Acaryochloris marina MBIC11017 |
| 28 | 1087209 | 1087460 | - | NC_022600.1 | Gloeobacter kilaueensis JS1 |
| 29 | 3198374 | 3198625 | - | NC_005125.1 | Gloeobacter violaceus PCC 7421 |
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| Neighborhood Conservation Analysis |
* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Representative Chosen(Species): NC_014501.1
| Sr.No. | Domain | Co-occurrence Frequency | No. of species in which domain occurs with smORF | Median distance b/w smORF and domain bearing ORFs | Orientation relative to smORF | PFAM Information |
|---|---|---|---|---|---|---|
| 1 | PF00582.28 | 0.62 | 18 | 459.0 | opposite-strand | Universal stress protein family |
| 2 | PF05151.14 | 0.66 | 19 | 144 | same-strand | Photosystem II reaction centre M protein (PsbM) |
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