Result : EXP01496
| Protein Information |
| Information Type | Description |
|---|---|
| Protein name | EXP01496 |
| NCBI Accession ID | BA000022.2 |
| Organism | Synechocystis sp. PCC 6803 |
| Left | 1590134 |
| Right | 1590382 |
| Strand | - |
| Nucleotide Sequence | ATGCAAAAAGCCGACGAATTTGCCATCCATCTGTTTTTGGCCAATGGCCATCGAGAGGAAGTCCGTTTCATGACCATTCAAGATTTCCAAAAATGGTATAGCAACGAAGTTGTGCCCAAGCACGATTCCCAGGAATTTATCAGTGTGCCTATCAGAAATATTCAGGGCGAGTACATGGTGGTGCGACCCTCGGCGATCGTTGCCATTCGGGTGGAACCAATTTTCTTTGGCAGTGTGGAGCGCATGTAA |
| Sequence | MQKADEFAIHLFLANGHREEVRFMTIQDFQKWYSNEVVPKHDSQEFISVPIRNIQGEYMVVRPSAIVAIRVEPIFFGSVERM |
| Source of smORF | Protein-level |
| Function | |
| Pubmed ID | 30796087 |
| Domain | |
| Functional Category | Function not yet assigned |
| Uniprot ID | |
| ORF Length (Amino Acid) | 82 |
++ More..
| Conservation Analysis |
No. of Species: 26
| Sr.No. | Left Position | Right Position | Strand | NCBI Accession id | Species Name |
|---|---|---|---|---|---|
| 1 | 2906259 | 2906477 | - | NC_010296.1 | Microcystis aeruginosa NIES-843 |
| 2 | 1492850 | 1493110 | + | NC_011729.1 | Gloeothece citriformis PCC 7424 |
| 3 | 1209845 | 1210096 | - | NC_019689.1 | Pleurocapsa sp. PCC 7327 |
| 4 | 2888973 | 2889188 | - | NC_019748.1 | Stanieria cyanosphaera PCC 7437 |
| 5 | 3240902 | 3241162 | - | NC_014501.1 | Gloeothece verrucosa PCC 7822 |
| 6 | 3360849 | 3361100 | - | NC_009925.1 | Acaryochloris marina MBIC11017 |
| 7 | 3627975 | 3628205 | - | NC_019776.1 | Cyanobacterium aponinum PCC 10605 |
| 8 | 3159355 | 3159573 | + | NZ_CP042326.1 | Euhalothece natronophila Z-M001 |
| 9 | 1271502 | 1271759 | - | NC_019729.1 | Oscillatoria nigro-viridis PCC 7112 |
| 10 | 965508 | 965762 | - | NZ_AP018202.1 | Thermostichus vulcanus NIES-2134 |
| 11 | 990625 | 990879 | + | NC_004113.1 | Thermosynechococcus vestitus BP-1 |
| 12 | 8128745 | 8128999 | - | NZ_CP024785.1 | Nostoc flagelliforme CCNUN1 |
| 13 | 3094075 | 3094326 | - | NC_019780.1 | Dactylococcopsis salina PCC 8305 |
| 14 | 2462579 | 2462797 | - | NZ_CP047242.1 | Trichormus variabilis 0441 |
| 15 | 4896236 | 4896490 | + | NZ_CP054698.1 | Nostoc edaphicum CCNP1411 |
| 16 | 6565372 | 6565626 | - | NC_010628.1 | Nostoc punctiforme PCC 73102 |
| 17 | 3434255 | 3434509 | - | NZ_CP031941.1 | Nostoc sphaeroides |
| 18 | 368782 | 369009 | + | NZ_CP018092.1 | Synechococcus lividus PCC 6715 |
| 19 | 4477590 | 4477844 | + | NC_019753.1 | Crinalium epipsammum PCC 9333 |
| 20 | 3256523 | 3256771 | + | NC_014248.1 | 'Nostoc azollae' 0708 |
| 21 | 2201216 | 2201425 | + | NC_019771.1 | Anabaena cylindrica PCC 7122 |
| 22 | 333031 | 333243 | + | NZ_AP014638.1 | Leptolyngbya boryana IAM M-101 |
| 23 | 2282650 | 2282862 | - | NC_019695.1 | Chroococcidiopsis thermalis PCC 7203 |
| 24 | 4338597 | 4338797 | - | NC_019693.1 | Oscillatoria acuminata PCC 6304 |
| 25 | 6198115 | 6198318 | + | NC_019751.1 | Calothrix sp. PCC 6303 |
| 26 | 319907 | 320161 | + | NZ_CP021983.2 | Halomicronema hongdechloris C2206 |
++ More..
| Neighborhood Conservation Analysis |
* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Representative Chosen(Species): NC_011729.1
| Sr.No. | Domain | Co-occurrence Frequency | No. of species in which domain occurs with smORF | Median distance b/w smORF and domain bearing ORFs | Orientation relative to smORF | PFAM Information |
|---|---|---|---|---|---|---|
| 1 | PF03562.19 | 0.81 | 21 | 7 | same-strand | MltA specific insert domain |
| 2 | PF06725.13 | 0.81 | 21 | 7 | same-strand | 3D domain |
++ More..