Result : B2TVP4
| Protein Information |
| Information Type | Description |
|---|---|
| Protein name | L-rhamnose mutarotase (EC 5.1.3.32) (Rhamnose 1-epimerase) (Type-3 mutarotase) |
| NCBI Accession ID | CP001063.1 |
| Organism | Shigella boydii serotype 18 (strain CDC 3083-94 / BS512) |
| Left | 4090625 |
| Right | 4090924 |
| Strand | - |
| Nucleotide Sequence | ATGATCCGCAAAGCCTTTGTCATGCAGGTTAACCCCGACGCCCACGAAGAGTATCAGCGTCGGCATAACCCCATCTGGCCGGAACTGGAAGCAGTGTTGAAATCTCACGGTGCGCATAACTACGCCATTTACCTCGACAAAGCGCGTAATCTGCTGTTTGCCACGGTAGAGATTGAATCTGAAGAACGGTGGAATGCGGTAGCCAGTACTGATGTTTGCCAACGTTGGTGGAAATATATGACCGATGTTATGCCCGCTAACCCGGATAACAGCCCGGTGAGTAGCGAGCTGCAAGGGTAA |
| Sequence | MIRKAFVMQVNPDAHEEYQRRHNPIWPELEAVLKSHGAHNYAIYLDKARNLLFATVEIESEERWNAVASTDVCQRWWKYMTDVMPANPDNSPVSSELQG |
| Source of smORF | Swiss-Prot |
| Function | Involved in the anomeric conversion of L-rhamnose. {ECO:0000255|HAMAP-Rule:MF_01663}. |
| Pubmed ID | |
| Domain | CDD:412827 |
| Functional Category | Others |
| Uniprot ID | B2TVP4 |
| ORF Length (Amino Acid) | 99 |
++ More..
| Conservation Analysis |
No. of Species: 144
| Sr.No. | Left Position | Right Position | Strand | NCBI Accession id | Species Name |
|---|---|---|---|---|---|
| 1 | 4893487 | 4893801 | - | NC_002695.2 | Escherichia coli O157:H7 str. Sakai |
| 2 | 4093124 | 4093438 | - | NC_000913.3 | Escherichia coli str. K-12 substr. MG1655 |
| 3 | 4106980 | 4107294 | - | NC_004337.2 | Shigella flexneri 2a str. 301 |
| 4 | 12845 | 13159 | - | NZ_CP061527.1 | Shigella dysenteriae |
| 5 | 118605 | 118919 | - | NZ_LR134340.1 | Escherichia marmotae |
| 6 | 3031523 | 3031837 | - | NZ_CP057657.1 | Escherichia fergusonii |
| 7 | 89257 | 89571 | - | NZ_CP013990.1 | Leclercia adecarboxylata |
| 8 | 4698915 | 4699229 | + | NC_015968.1 | Enterobacter soli |
| 9 | 4499407 | 4499721 | + | NZ_CP011602.1 | Phytobacter ursingii |
| 10 | 4253509 | 4253823 | - | NC_003197.2 | Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 |
| 11 | 672520 | 672834 | - | NZ_CP045205.1 | Citrobacter telavivensis |
| 12 | 2044390 | 2044704 | - | NZ_CP053416.1 | Salmonella bongori |
| 13 | 2679168 | 2679482 | - | NZ_CP025034.2 | Enterobacter sp. SGAir0187 |
| 14 | 4528431 | 4528745 | + | NZ_AP022508.1 | Enterobacter bugandensis |
| 15 | 5478109 | 5478423 | + | NZ_CP046672.1 | Raoultella ornithinolytica |
| 16 | 2876148 | 2876462 | + | NC_009792.1 | Citrobacter koseri ATCC BAA-895 |
| 17 | 1831496 | 1831810 | - | NZ_CP026047.1 | Raoultella planticola |
| 18 | 2226780 | 2227094 | + | NZ_CP044098.1 | Citrobacter portucalensis |
| 19 | 4057928 | 4058242 | + | NC_013716.1 | Citrobacter rodentium ICC168 |
| 20 | 6063189 | 6063503 | + | NZ_CP036175.1 | Klebsiella huaxiensis |
| 21 | 4993014 | 4993328 | + | NZ_CP043318.1 | Enterobacter chengduensis |
| 22 | 382398 | 382712 | + | NZ_CP051548.1 | Phytobacter diazotrophicus |
| 23 | 1001637 | 1001951 | + | NZ_LT556085.1 | Citrobacter amalonaticus |
| 24 | 5403567 | 5403881 | - | NZ_CP015113.1 | Kosakonia radicincitans |
| 25 | 2547863 | 2548177 | - | NZ_AP019007.1 | Enterobacter oligotrophicus |
| 26 | 5332805 | 5333119 | + | NZ_CP014007.2 | Kosakonia oryzae |
| 27 | 4748890 | 4749204 | + | NZ_CP009756.1 | Enterobacter cloacae |
| 28 | 2857714 | 2858028 | - | NZ_CP033744.1 | Citrobacter freundii |
| 29 | 3388765 | 3389079 | + | NZ_CP023529.1 | Lelliottia amnigena |
| 30 | 4602944 | 4603258 | + | NZ_CP045845.1 | Kluyvera intermedia |
| 31 | 3687530 | 3687844 | - | NZ_CP045769.1 | Enterobacter cancerogenus |
| 32 | 3138173 | 3138487 | + | NZ_CP017279.1 | Enterobacter ludwigii |
| 33 | 5143267 | 5143581 | + | NZ_CP065838.1 | Klebsiella quasipneumoniae |
| 34 | 6064850 | 6065164 | + | NZ_CP060111.1 | Klebsiella michiganensis |
| 35 | 62165 | 62479 | - | NC_016845.1 | Klebsiella pneumoniae subsp. pneumoniae HS11286 |
| 36 | 5435622 | 5435936 | + | NZ_CP054254.1 | Klebsiella variicola |
| 37 | 10164 | 10478 | - | NZ_CP012871.1 | [Enterobacter] lignolyticus |
| 38 | 1004980 | 1005294 | + | NZ_CP040428.1 | Jejubacter calystegiae |
| 39 | 797872 | 798186 | + | NZ_CP020388.1 | Pluralibacter gergoviae |
| 40 | 3217465 | 3217779 | - | NZ_CP016337.1 | Kosakonia sacchari |
| 41 | 4482598 | 4482912 | + | NZ_CP054058.1 | Scandinavium goeteborgense |
| 42 | 5499003 | 5499317 | + | NZ_CP050508.1 | Raoultella terrigena |
| 43 | 3246348 | 3246662 | + | NZ_CP038469.1 | Citrobacter tructae |
| 44 | 65403 | 65717 | - | NZ_CP063425.1 | Kosakonia pseudosacchari |
| 45 | 1795920 | 1796234 | - | NZ_CP042941.1 | Atlantibacter hermannii |
| 46 | 5008387 | 5008701 | + | NZ_LR134475.1 | Klebsiella aerogenes |
| 47 | 4599913 | 4600227 | + | NZ_CP035129.1 | Kosakonia cowanii |
| 48 | 3092698 | 3093012 | + | NZ_CP045300.1 | Kosakonia arachidis |
| 49 | 4270086 | 4270400 | - | NZ_CP013940.1 | Cronobacter malonaticus LMG 23826 |
| 50 | 248795 | 249088 | + | NZ_AP023184.1 | Buttiauxella agrestis |
| 51 | 3873775 | 3874089 | + | NZ_CP012268.1 | Cronobacter muytjensii ATCC 51329 |
| 52 | 3259710 | 3260024 | + | NZ_CP027107.1 | Cronobacter sakazakii |
| 53 | 2277178 | 2277492 | + | NZ_CP009460.1 | Dickeya fangzhongdai |
| 54 | 2675957 | 2676271 | - | NZ_CP015137.1 | Dickeya solani IPO 2222 |
| 55 | 120731 | 121045 | - | NZ_CP012257.1 | Cronobacter universalis NCTC 9529 |
| 56 | 511778 | 512092 | - | NC_014500.1 | Dickeya dadantii 3937 |
| 57 | 81055 | 81342 | - | NC_017910.1 | Shimwellia blattae DSM 4481 = NBRC 105725 |
| 58 | 185709 | 186023 | - | NZ_CP012266.1 | Cronobacter dublinensis subsp. dublinensis LMG 23823 |
| 59 | 186487 | 186801 | - | NZ_CP012264.1 | Cronobacter condimenti 1330 |
| 60 | 4094345 | 4094659 | + | NC_012912.1 | Dickeya chrysanthemi Ech1591 |
| 61 | 3977267 | 3977581 | + | NZ_CP046293.1 | Yersinia intermedia |
| 62 | 4837091 | 4837405 | - | NZ_CP014137.1 | Brenneria goodwinii |
| 63 | 512810 | 513124 | - | NZ_CP025799.1 | Dickeya zeae |
| 64 | 1057362 | 1057676 | - | NZ_CP007044.2 | Chania multitudinisentens RB-25 |
| 65 | 542571 | 542885 | - | NZ_LT615367.1 | Dickeya aquatica |
| 66 | 1623211 | 1623525 | + | NZ_CP011254.1 | Serratia fonticola |
| 67 | 2991442 | 2991756 | - | NZ_CP014136.1 | Gibbsiella quercinecans |
| 68 | 1178169 | 1178483 | - | NZ_CP050150.1 | Hafnia alvei |
| 69 | 5060307 | 5060621 | + | NZ_CP023525.1 | Cedecea neteri |
| 70 | 4367204 | 4367518 | - | NZ_CP034752.1 | Jinshanibacter zhutongyuii |
| 71 | 4365729 | 4366043 | - | NZ_CP017482.1 | Pectobacterium polaris |
| 72 | 1092716 | 1093030 | + | NZ_CP047495.1 | Pectobacterium brasiliense |
| 73 | 2083876 | 2084190 | - | NZ_CP007230.1 | Yersinia similis |
| 74 | 4120281 | 4120595 | + | NZ_LR134373.1 | Yersinia pseudotuberculosis |
| 75 | 533055 | 533369 | - | NZ_CP034938.1 | Pectobacterium odoriferum |
| 76 | 4327634 | 4327948 | + | NZ_CP051652.1 | Pectobacterium carotovorum |
| 77 | 4060368 | 4060682 | + | NC_012880.1 | Musicola paradisiaca Ech703 |
| 78 | 3376274 | 3376588 | - | NZ_CP009781.1 | Yersinia aldovae 670-83 |
| 79 | 493885 | 494199 | - | NZ_CP009125.1 | Pectobacterium atrosepticum |
| 80 | 3557309 | 3557623 | - | NZ_CP029185.2 | Limnobaculum parvum |
| 81 | 2955546 | 2955860 | + | NZ_CP067057.1 | Rahnella aceris |
| 82 | 562882 | 563196 | - | NZ_CP038498.1 | Pectobacterium punjabense |
| 83 | 830174 | 830488 | + | NZ_CP006569.1 | Sodalis praecaptivus |
| 84 | 4267491 | 4267805 | + | NZ_CP034036.1 | Brenneria nigrifluens DSM 30175 = ATCC 13028 |
| 85 | 2302536 | 2302850 | + | NC_014306.1 | Erwinia billingiae Eb661 |
| 86 | 3504549 | 3504863 | + | NZ_CP015749.1 | Pectobacterium parmentieri |
| 87 | 3837495 | 3837809 | + | NZ_CP029736.1 | Providencia rettgeri |
| 88 | 4417680 | 4417994 | + | NZ_CP065044.1 | Pectobacterium aroidearum |
| 89 | 2323001 | 2323315 | - | NZ_CP015750.1 | Pectobacterium wasabiae CFBP 3304 |
| 90 | 2038952 | 2039266 | + | NZ_CP045720.1 | Pantoea eucalypti |
| 91 | 2031240 | 2031554 | - | NZ_CP034148.1 | Pantoea agglomerans |
| 92 | 2926428 | 2926742 | + | NZ_LS483422.1 | Providencia heimbachae |
| 93 | 2027495 | 2027809 | + | NZ_CP038853.1 | Pantoea vagans |
| 94 | 2288072 | 2288386 | - | NZ_CP026377.1 | Mixta gaviniae |
| 95 | 2238747 | 2239061 | + | NZ_LR134494.1 | Serratia quinivorans |
| 96 | 3661496 | 3661810 | + | NZ_CP019706.1 | Pantoea alhagi |
| 97 | 2196875 | 2197189 | - | NZ_CP061511.1 | Mixta calida |
| 98 | 1746930 | 1747244 | + | NC_017554.1 | Pantoea ananatis PA13 |
| 99 | 1427215 | 1427529 | - | NZ_CP028271.1 | Mixta intestinalis |
| 100 | 1888926 | 1889240 | + | NZ_CP015031.1 | Basfia succiniciproducens |
| 101 | 2252467 | 2252781 | - | NC_006300.1 | [Mannheimia] succiniciproducens MBEL55E |
| 102 | 1976186 | 1976500 | - | NZ_LN907827.1 | Erwinia gerundensis |
| 103 | 4001474 | 4001788 | + | NZ_CP042220.2 | Dickeya poaceiphila |
| 104 | 392003 | 392317 | - | NZ_CP031560.1 | Dickeya dianthicola |
| 105 | 1131964 | 1132278 | - | NC_012691.1 | Tolumonas auensis DSM 9187 |
| 106 | 2733626 | 2733940 | + | NZ_CP023344.1 | Nibricoccus aquaticus |
| 107 | 896798 | 897112 | + | NZ_CP007445.1 | Gilliamella apicola |
| 108 | 2605129 | 2605443 | + | NZ_LT906479.1 | Serratia ficaria |
| 109 | 5521233 | 5521547 | - | NZ_CP051774.1 | Luteolibacter luteus |
| 110 | 1688600 | 1688914 | + | NC_010571.1 | Opitutus terrae PB90-1 |
| 111 | 1512045 | 1512359 | + | NZ_CP016094.1 | Lacunisphaera limnophila |
| 112 | 4355427 | 4355741 | - | NZ_LS483476.1 | Lederbergia lentus |
| 113 | 3806732 | 3807046 | - | NZ_CP020028.1 | Paenibacillus kribbensis |
| 114 | 524067 | 524381 | + | NC_004193.1 | Oceanobacillus iheyensis HTE831 |
| 115 | 1039679 | 1039993 | + | NZ_CP016622.1 | Parageobacillus thermoglucosidasius |
| 116 | 2248332 | 2248625 | + | NZ_CP009977.1 | Vibrio natriegens NBRC 15636 = ATCC 14048 = DSM 759 |
| 117 | 2214795 | 2215109 | + | NZ_CP042425.1 | Limnoglobus roseus |
| 118 | 3504183 | 3504497 | + | NC_016641.1 | Paenibacillus terrae HPL-003 |
| 119 | 1142830 | 1143144 | + | NZ_CP050851.1 | Aeromonas hydrophila |
| 120 | 2291571 | 2291888 | - | NZ_CP041217.1 | Saccharibacillus brassicae |
| 121 | 904135 | 904449 | + | NZ_CP036291.1 | Pirellulimonas nuda |
| 122 | 3581538 | 3581852 | - | NZ_LR134376.1 | Aeromonas encheleia |
| 123 | 4806001 | 4806315 | + | NZ_CP009933.1 | Clostridium scatologenes |
| 124 | 5110931 | 5111245 | - | NZ_CP020953.1 | Clostridium drakei |
| 125 | 2879967 | 2880281 | + | NZ_CP039456.1 | Changchengzhania lutea |
| 126 | 1426015 | 1426329 | + | NZ_AP014635.1 | Vibrio tritonius |
| 127 | 4301573 | 4301887 | - | NZ_CP011803.1 | Clostridium carboxidivorans P7 |
| 128 | 3282283 | 3282597 | + | NZ_CP009285.1 | Paenibacillus borealis |
| 129 | 3520200 | 3520514 | - | NZ_CP043404.1 | Bacillus safensis |
| 130 | 5955846 | 5956160 | + | NZ_CP030041.1 | Echinicola strongylocentroti |
| 131 | 3064287 | 3064580 | - | NZ_CP013984.1 | Bacillus inaquosorum |
| 132 | 2138192 | 2138506 | - | NZ_CP013862.1 | Lentibacillus amyloliquefaciens |
| 133 | 3065543 | 3065857 | - | NZ_CP033052.1 | Bacillus vallismortis |
| 134 | 3003110 | 3003424 | - | NZ_CP034943.1 | Bacillus subtilis subsp. spizizenii ATCC 6633 = JCM 2499 |
| 135 | 3830898 | 3831212 | - | NZ_CP043998.1 | Clostridium diolis |
| 136 | 243477 | 243788 | + | NZ_CP065211.1 | Enterococcus lactis |
| 137 | 214597 | 214908 | + | NC_020207.1 | Enterococcus faecium ATCC 8459 = NRRL B-2354 |
| 138 | 849833 | 850147 | - | NZ_CP047476.1 | Vibrio astriarenae |
| 139 | 3199233 | 3199526 | - | NC_000964.3 | Bacillus subtilis subsp. subtilis str. 168 |
| 140 | 1694396 | 1694710 | - | NZ_CP008876.1 | Terribacillus goriensis |
| 141 | 3064077 | 3064370 | + | NZ_CP029364.1 | Bacillus halotolerans |
| 142 | 292194 | 292505 | + | NZ_LT906439.1 | Streptococcus merionis |
| 143 | 1197702 | 1197995 | - | NZ_CP040991.1 | Vibrio furnissii |
| 144 | 2985283 | 2985576 | - | NZ_CP051464.1 | Bacillus mojavensis |
| 145 | 1008144 | 1008458 | + | NZ_CP015756.1 | Clostridium estertheticum subsp. estertheticum |
++ More..
| Neighborhood Conservation Analysis |
* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Representative Chosen(Species): NC_002695.2
| Sr.No. | Domain | Co-occurrence Frequency | No. of species in which domain occurs with smORF | Median distance b/w smORF and domain bearing ORFs | Orientation relative to smORF | PFAM Information |
|---|---|---|---|---|---|---|
| 1 | PF00596.23 | 0.67 | 97 | 347.5 | same-strand | Class II Aldolase and Adducin N-terminal domain |
| 2 | PF06134.13 | 0.69 | 100 | 1122 | same-strand | L-rhamnose isomerase (RhaA) |
| 3 | PF00370.23 | 0.69 | 99 | 2287.0 | same-strand | FGGY family of carbohydrate kinases, N-terminal domain |
| 4 | PF02782.18 | 0.69 | 100 | 2286 | same-strand | FGGY family of carbohydrate kinases, C-terminal domain |
| 5 | PF12833.9 | 0.65 | 93 | 4357.0 | opposite-strand | Helix-turn-helix domain |
| 6 | PF00165.25 | 0.65 | 93 | 4298 | opposite-strand | Bacterial regulatory helix-turn-helix proteins, AraC family |
++ More..