Protein Information |
Information Type | Description |
---|---|
Protein name | EXP01387 |
NCBI Accession ID | NC_007633.1 |
Organism | Mycoplasma capricolum subsp. capricolum ATCC 27343 |
Left | 399217 |
Right | 399504 |
Strand | - |
Nucleotide Sequence | ATGATTATGACAAATACTATGATTAATAAAAATAAGAATCTAAGAAAAGATATCGCTTCAAATCAAATGTTAGAAAAGCATCAATTAATTAGAATTGTTAAAAATAAAAATGACGAGATTTTTATTGATACTACTTATAAAGCTAATGGTAGAGGTGTTTATCTAAAACCAGATTTAAATAGTTTAAAAATAGCAAGAGAAAAAAATTTGATTGCAAAAAGTTTAAAATCAAAAATAGATGTATCTATTTATGATCAACTAGAAGAATTTATTAATGCAAAAAGATAA |
Sequence | MIMTNTMINKNKNLRKDIASNQMLEKHQLIRIVKNKNDEIFIDTTYKANGRGVYLKPDLNSLKIAREKNLIAKSLKSKIDVSIYDQLEEFINAKR |
Source of smORF | Protein-level |
Function | The ORF matches to the profile of cl00189. Profile Description: N/A. Ylxr homologs; group of conserved hypothetical bacterial proteins of unknown function; structure revealed putative RNA binding cleft; proteins are encoded by an operon that includes other proteins involved in transcription and/or translation |
Pubmed ID | 30796087 |
Domain | CDD:412207 |
Functional Category | Conserved domain based functional assignment |
Uniprot ID | |
ORF Length (Amino Acid) | 95 |
Conservation Analysis |
Sr.No. | Left Position | Right Position | Strand | NCBI Accession id | Species Name |
---|---|---|---|---|---|
1 | 399217 | 399504 | - | NC_007633.1 | Mycoplasma capricolum subsp. capricolum ATCC 27343 |
2 | 382731 | 383000 | - | NZ_CP001668.1 | Mycoplasma mycoides subsp. capri str. GM12 |
3 | 246705 | 246974 | + | NZ_CP007520.1 | Mycoplasma yeatsii GM274B |
4 | 348626 | 348889 | + | NZ_CP024411.1 | Mesoplasma entomophilum |
5 | 359706 | 359969 | + | NZ_CP023173.1 | Mesoplasma chauliocola |
6 | 338306 | 338569 | + | NC_006055.1 | Mesoplasma florum L1 |
7 | 352248 | 352511 | + | NZ_CP024969.1 | Mesoplasma tabanidae |
8 | 530418 | 530684 | - | NZ_LS991954.1 | Mycoplasma putrefaciens |
9 | 392322 | 392585 | + | NZ_CP024964.1 | Entomoplasma melaleucae |
10 | 401170 | 401433 | + | NZ_CP025257.1 | Mesoplasma syrphidae |
11 | 379067 | 379354 | + | NZ_CP024965.1 | Entomoplasma somnilux |
12 | 437373 | 437639 | + | NZ_CP006681.1 | Spiroplasma culicicola AES-1 |
13 | 652364 | 652639 | - | NZ_CP006934.1 | Spiroplasma sabaudiense Ar-1343 |
14 | 592986 | 593252 | + | NZ_CP043026.1 | Spiroplasma chinense |
15 | 425581 | 425850 | + | NZ_CP038013.1 | Spiroplasma gladiatoris |
16 | 1087518 | 1087790 | - | NZ_CP024870.1 | Spiroplasma clarkii |
17 | 365064 | 365348 | + | NZ_CP012328.1 | Spiroplasma turonicum |
Neighborhood Conservation Analysis |
Sr.No. | Domain | Co-occurrence Frequency | No. of species in which domain occurs with smORF | Median distance b/w smORF and domain bearing ORFs | Orientation relative to smORF | PFAM Information |
---|---|---|---|---|---|---|
1 | PF00009.29 | 1.0 | 17 | 312 | same-strand | Elongation factor Tu GTP binding domain |
2 | PF11987.10 | 1.0 | 17 | 312 | same-strand | Translation-initiation factor 2 |
3 | PF01926.25 | 1.0 | 17 | 312 | same-strand | 50S ribosome-binding GTPase |
4 | PF04760.17 | 0.76 | 13 | 308 | same-strand | Translation initiation factor IF-2, N-terminal region |
5 | PF00071.24 | 1.0 | 17 | 312 | same-strand | Ras family |
6 | PF01248.28 | 0.71 | 12 | -13.0 | same-strand | Ribosomal protein L7Ae/L30e/S12e/Gadd45 family |