Result : EXP01343
| Protein Information |
| Information Type | Description |
|---|---|
| Protein name | EXP01343 |
| NCBI Accession ID | NC_000913.3 |
| Organism | Escherichia coli K12 |
| Left | 1737456 |
| Right | 1737545 |
| Strand | - |
| Nucleotide Sequence | ATGAGCACCGACCTTAAATTTTCACTGGTAACAACGATTATCGTCCTCGGTTTGATCGTAGCCGTGGGTTTGACTGCCGCGCTGCACTGA |
| Sequence | MSTDLKFSLVTTIIVLGLIVAVGLTAALH |
| Source of smORF | Literature |
| Function | Found to be membrane localised by experiment. Pubmed:19121005 |
| Pubmed ID | 30796087 |
| Domain | |
| Functional Category | Manually curated function from literature |
| Uniprot ID | A5A618 |
| ORF Length (Amino Acid) | 29 |
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| Conservation Analysis |
No. of Species: 88
| Sr.No. | Left Position | Right Position | Strand | NCBI Accession id | Species Name |
|---|---|---|---|---|---|
| 1 | 2337304 | 2337393 | - | NC_002695.2 | Escherichia coli O157:H7 str. Sakai |
| 2 | 1673781 | 1673870 | - | NZ_AP014857.1 | Escherichia albertii |
| 3 | 1737456 | 1737545 | - | NC_000913.3 | Escherichia coli str. K-12 substr. MG1655 |
| 4 | 2075753 | 2075842 | + | NZ_LR134340.1 | Escherichia marmotae |
| 5 | 1885190 | 1885279 | + | NZ_CP061527.1 | Shigella dysenteriae |
| 6 | 1717145 | 1717234 | - | NC_004337.2 | Shigella flexneri 2a str. 301 |
| 7 | 2457046 | 2457135 | - | NZ_CP012871.1 | [Enterobacter] lignolyticus |
| 8 | 4944432 | 4944521 | + | NZ_CP033744.1 | Citrobacter freundii |
| 9 | 115154 | 115243 | - | NZ_CP044098.1 | Citrobacter portucalensis |
| 10 | 808324 | 808413 | + | NZ_CP038469.1 | Citrobacter tructae |
| 11 | 3898090 | 3898179 | + | NZ_CP053416.1 | Salmonella bongori |
| 12 | 1604925 | 1605014 | - | NC_009792.1 | Citrobacter koseri ATCC BAA-895 |
| 13 | 1509232 | 1509321 | + | NC_003197.2 | Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 |
| 14 | 1472549 | 1472638 | + | NZ_CP011602.1 | Phytobacter ursingii |
| 15 | 2734114 | 2734203 | + | NZ_CP051548.1 | Phytobacter diazotrophicus |
| 16 | 1213650 | 1213739 | + | NZ_CP017279.1 | Enterobacter ludwigii |
| 17 | 2467285 | 2467374 | + | NZ_CP046672.1 | Raoultella ornithinolytica |
| 18 | 3344861 | 3344950 | - | NZ_CP045205.1 | Citrobacter telavivensis |
| 19 | 3649643 | 3649732 | + | NZ_LT556085.1 | Citrobacter amalonaticus |
| 20 | 2688916 | 2689005 | + | NZ_CP036175.1 | Klebsiella huaxiensis |
| 21 | 2719964 | 2720053 | - | NZ_CP013990.1 | Leclercia adecarboxylata |
| 22 | 1453511 | 1453600 | - | NZ_CP045769.1 | Enterobacter cancerogenus |
| 23 | 4802371 | 4802460 | - | NZ_CP026047.1 | Raoultella planticola |
| 24 | 2325642 | 2325731 | + | NZ_CP041247.1 | Raoultella electrica |
| 25 | 3840699 | 3840788 | - | NZ_CP020388.1 | Pluralibacter gergoviae |
| 26 | 2002034 | 2002123 | + | NZ_CP009756.1 | Enterobacter cloacae |
| 27 | 1984616 | 1984705 | + | NZ_AP022508.1 | Enterobacter bugandensis |
| 28 | 1512864 | 1512953 | + | NC_013716.1 | Citrobacter rodentium ICC168 |
| 29 | 920184 | 920273 | - | NZ_CP045300.1 | Kosakonia arachidis |
| 30 | 2218517 | 2218606 | + | NZ_CP043318.1 | Enterobacter chengduensis |
| 31 | 544175 | 544264 | - | NZ_CP025034.2 | Enterobacter sp. SGAir0187 |
| 32 | 1928770 | 1928859 | + | NZ_CP017184.1 | Enterobacter roggenkampii |
| 33 | 2156905 | 2156994 | + | NZ_CP063425.1 | Kosakonia pseudosacchari |
| 34 | 25027 | 25116 | + | NZ_AP019007.1 | Enterobacter oligotrophicus |
| 35 | 4470033 | 4470122 | + | NZ_AP019007.1 | Enterobacter oligotrophicus |
| 36 | 1955445 | 1955534 | + | NC_015968.1 | Enterobacter soli |
| 37 | 2010084 | 2010173 | + | NZ_CP027986.1 | Enterobacter sichuanensis |
| 38 | 2615106 | 2615195 | + | NZ_CP060111.1 | Klebsiella michiganensis |
| 39 | 3019304 | 3019393 | - | NZ_CP014007.2 | Kosakonia oryzae |
| 40 | 2216027 | 2216116 | - | NZ_CP013940.1 | Cronobacter malonaticus LMG 23826 |
| 41 | 2115634 | 2115723 | + | NZ_CP015113.1 | Kosakonia radicincitans |
| 42 | 2445884 | 2445973 | + | NZ_CP050508.1 | Raoultella terrigena |
| 43 | 413217 | 413306 | + | NZ_CP057657.1 | Escherichia fergusonii |
| 44 | 2061063 | 2061152 | - | NZ_CP012268.1 | Cronobacter muytjensii ATCC 51329 |
| 45 | 2639950 | 2640039 | - | NZ_LR134201.1 | Cedecea lapagei |
| 46 | 1952925 | 1953014 | + | NZ_CP012257.1 | Cronobacter universalis NCTC 9529 |
| 47 | 1435781 | 1435870 | - | NZ_CP027107.1 | Cronobacter sakazakii |
| 48 | 968997 | 969086 | - | NZ_CP016337.1 | Kosakonia sacchari |
| 49 | 1946350 | 1946439 | + | NZ_CP012264.1 | Cronobacter condimenti 1330 |
| 50 | 870372 | 870461 | + | NZ_CP023529.1 | Lelliottia amnigena |
| 51 | 2001247 | 2001336 | + | NZ_CP012266.1 | Cronobacter dublinensis subsp. dublinensis LMG 23823 |
| 52 | 2872957 | 2873046 | - | NZ_LR134475.1 | Klebsiella aerogenes |
| 53 | 2871294 | 2871383 | - | NZ_CP023525.1 | Cedecea neteri |
| 54 | 3693676 | 3693765 | + | NZ_CP042941.1 | Atlantibacter hermannii |
| 55 | 2594435 | 2594524 | - | NZ_CP035129.1 | Kosakonia cowanii |
| 56 | 3565258 | 3565347 | + | NZ_CP040428.1 | Jejubacter calystegiae |
| 57 | 2970573 | 2970662 | - | NC_016845.1 | Klebsiella pneumoniae subsp. pneumoniae HS11286 |
| 58 | 2270667 | 2270756 | + | NZ_CP065838.1 | Klebsiella quasipneumoniae |
| 59 | 2080764 | 2080853 | + | NZ_AP023184.1 | Buttiauxella agrestis |
| 60 | 2352999 | 2353088 | + | NZ_CP054254.1 | Klebsiella variicola |
| 61 | 2349280 | 2349369 | - | NC_017910.1 | Shimwellia blattae DSM 4481 = NBRC 105725 |
| 62 | 2022373 | 2022462 | + | NZ_CP054058.1 | Scandinavium goeteborgense |
| 63 | 1820781 | 1820870 | + | NZ_CP016043.1 | Edwardsiella hoshinae |
| 64 | 3490993 | 3491082 | + | NZ_CP023706.1 | Edwardsiella tarda |
| 65 | 3738133 | 3738222 | + | NZ_CP006664.1 | Edwardsiella anguillarum ET080813 |
| 66 | 2029243 | 2029332 | - | NC_012779.2 | Edwardsiella ictaluri 93-146 |
| 67 | 2466827 | 2466916 | - | NZ_CP045845.1 | Kluyvera intermedia |
| 68 | 2170189 | 2170278 | + | NC_014306.1 | Erwinia billingiae Eb661 |
| 69 | 2365789 | 2365878 | - | NZ_CP050150.1 | Hafnia alvei |
| 70 | 2298898 | 2298987 | + | NC_015567.1 | Serratia plymuthica AS9 |
| 71 | 2391526 | 2391615 | + | NZ_LR134494.1 | Serratia quinivorans |
| 72 | 2383903 | 2383992 | + | NZ_LT906479.1 | Serratia ficaria |
| 73 | 2771004 | 2771093 | - | NZ_CP071320.1 | Serratia ureilytica |
| 74 | 183088 | 183177 | + | NZ_CP049115.1 | Pantoea stewartii |
| 75 | 2256051 | 2256140 | - | NZ_CP038853.1 | Pantoea vagans |
| 76 | 2058950 | 2059039 | + | NZ_CP061511.1 | Mixta calida |
| 77 | 1838502 | 1838591 | + | NZ_CP015581.1 | Tatumella citrea |
| 78 | 2331724 | 2331813 | + | NZ_CP048784.1 | Serratia liquefaciens |
| 79 | 2337113 | 2337202 | + | NZ_CP038662.1 | Serratia nematodiphila |
| 80 | 1799578 | 1799667 | + | NZ_CP034148.1 | Pantoea agglomerans |
| 81 | 2261330 | 2261419 | - | NZ_CP045720.1 | Pantoea eucalypti |
| 82 | 1824763 | 1824852 | + | NZ_LN907827.1 | Erwinia gerundensis |
| 83 | 4552438 | 4552527 | + | NZ_CP011254.1 | Serratia fonticola |
| 84 | 2005968 | 2006057 | + | NC_012880.1 | Musicola paradisiaca Ech703 |
| 85 | 2110423 | 2110512 | + | NZ_CP026377.1 | Mixta gaviniae |
| 86 | 2579124 | 2579213 | - | NC_017554.1 | Pantoea ananatis PA13 |
| 87 | 2144912 | 2145001 | + | NZ_CP034938.1 | Pectobacterium odoriferum |
| 88 | 2807242 | 2807334 | + | NZ_CP023009.1 | Lonsdalea britannica |
| 89 | 2028360 | 2028449 | + | NZ_CP051652.1 | Pectobacterium carotovorum |
| 90 | 1643151 | 1643243 | + | NZ_CP065534.1 | Lonsdalea populi |
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| Neighborhood Conservation Analysis |
* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Representative Chosen(Species): NZ_LR134340.1
| Sr.No. | Domain | Co-occurrence Frequency | No. of species in which domain occurs with smORF | Median distance b/w smORF and domain bearing ORFs | Orientation relative to smORF | PFAM Information |
|---|---|---|---|---|---|---|
| 1 | PF00462.26 | 0.98 | 86 | 3182 | same-strand | Glutaredoxin |
| 2 | PF00877.21 | 0.99 | 87 | 2070.0 | opposite-strand | NlpC/P60 family |
| 3 | PF02777.20 | 0.7 | 62 | 1370.0 | opposite-strand | Iron/manganese superoxide dismutases, C-terminal domain |
| 4 | PF00081.24 | 0.72 | 63 | 1370 | opposite-strand | Iron/manganese superoxide dismutases, alpha-hairpin domain |
| 5 | PF07690.18 | 0.93 | 82 | 2360 | opposite-strand | Major Facilitator Superfamily |
| 6 | PF06779.16 | 0.62 | 55 | 167 | same-strand | Uncharacterised MFS-type transporter YbfB |
| 7 | PF13377.8 | 0.99 | 87 | 298 | opposite-strand | Periplasmic binding protein-like domain |
| 8 | PF00532.23 | 1.0 | 88 | 298.0 | opposite-strand | Periplasmic binding proteins and sugar binding domain of LacI family |
| 9 | PF13407.8 | 1.0 | 88 | 298.0 | opposite-strand | Periplasmic binding protein domain |
| 10 | PF00356.23 | 1.0 | 88 | 298.0 | opposite-strand | Bacterial regulatory proteins, lacI family |
| 11 | PF03466.22 | 0.94 | 83 | 1340 | same-strand | LysR substrate binding domain |
| 12 | PF00126.29 | 0.94 | 83 | 1340 | same-strand | Bacterial regulatory helix-turn-helix protein, lysR family |
| 13 | PF02353.22 | 0.93 | 82 | 3860.5 | opposite-strand | Mycolic acid cyclopropane synthetase |
| 14 | PF13649.8 | 0.93 | 82 | 3860.5 | opposite-strand | Methyltransferase domain |
| 15 | PF08241.14 | 0.93 | 82 | 3860.5 | opposite-strand | Methyltransferase domain |
| 16 | PF08242.14 | 0.93 | 82 | 3860.5 | opposite-strand | Methyltransferase domain |
| 17 | PF00677.19 | 0.7 | 62 | 5048.0 | same-strand | Lumazine binding domain |
| 18 | PF00929.26 | 0.83 | 73 | 3574 | opposite-strand | Exonuclease |
| 19 | PF16473.7 | 0.7 | 62 | 3574.0 | opposite-strand | 3' exoribonuclease, RNase T-like |
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