* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Representative Chosen(Species): NC_017379.1
Sr.No. |
Domain |
Co-occurrence Frequency |
No. of species in which domain occurs with smORF |
Median distance b/w smORF and domain bearing ORFs |
Orientation relative to smORF |
PFAM Information |
1
|
PF00149.30
|
1.0
|
2
|
3267.5
|
same-strand
|
Calcineurin-like phosphoesterase
|
2
|
PF00486.30
|
1.0
|
2
|
2241.0
|
same-strand
|
Transcriptional regulatory protein, C terminal
|
3
|
PF00072.26
|
1.0
|
2
|
2241.0
|
same-strand
|
Response regulator receiver domain
|
4
|
PF00771.22
|
1.0
|
2
|
174.5
|
opposite-strand
|
FHIPEP family
|
5
|
PF00312.24
|
1.0
|
2
|
2524.0
|
same-strand
|
Ribosomal protein S15
|
6
|
PF04932.17
|
1.0
|
2
|
2841.0
|
same-strand
|
O-Antigen ligase
|
7
|
PF01220.21
|
1.0
|
2
|
4254.5
|
same-strand
|
Dehydroquinase class II
|
++ More..