Result : B2S3Z7
| Protein Information |
| Information Type | Description |
|---|---|
| Protein name | 30S ribosomal protein S21 |
| NCBI Accession ID | CP000805.1 |
| Organism | Treponema pallidum subsp. pallidum (strain SS14) |
| Left | 823270 |
| Right | 823479 |
| Strand | - |
| Nucleotide Sequence | GTGGCTCACATAACGGTGGATGATTCTGAGAATTTAGAGAAGGCAATTAAGCGCTTCAAGCGCCAGGTGGAGAAGGAAGGTATTATTCGCGAGTGGAAGAAAAAAGAATTTTATGAGAAGCCTTCCACGCTTCTGAATCGCAAGAAGAAGGCGTTGCGGCGCAAGCTGATGAAGAAGGGGCGCAAGGTCAGCGACTCAAGGCTGTACTAG |
| Sequence | MAHITVDDSENLEKAIKRFKRQVEKEGIIREWKKKEFYEKPSTLLNRKKKALRRKLMKKGRKVSDSRLY |
| Source of smORF | Swiss-Prot |
| Function | The ORF matches to the profile of cl00529. Profile Description: Ribosomal protein S21. 30S ribosomal protein S21; Reviewed |
| Pubmed ID | 18482458 |
| Domain | CDD:412427 |
| Functional Category | Ribosomal_protein |
| Uniprot ID | B2S3Z7 |
| ORF Length (Amino Acid) | 69 |
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| Conservation Analysis |
No. of Species: 31
| Sr.No. | Left Position | Right Position | Strand | NCBI Accession id | Species Name |
|---|---|---|---|---|---|
| 1 | 816685 | 816894 | - | NC_015714.1 | Treponema paraluiscuniculi Cuniculi A |
| 2 | 2496438 | 2496647 | + | NC_002967.9 | Treponema denticola ATCC 35405 |
| 3 | 322488 | 322697 | - | NZ_CP009228.1 | Treponema putidum |
| 4 | 1911571 | 1911780 | - | NC_022097.1 | Treponema pedis str. T A4 |
| 5 | 2469201 | 2469413 | + | NZ_CP031518.1 | Treponema ruminis |
| 6 | 1651434 | 1651652 | + | NC_017098.1 | Spirochaeta africana DSM 8902 |
| 7 | 2190917 | 2191120 | - | NC_015732.1 | Treponema caldarium DSM 7334 |
| 8 | 2003891 | 2004100 | + | NZ_CP054142.1 | Treponema parvum |
| 9 | 1201828 | 1202031 | - | NC_015577.1 | Treponema azotonutricium ZAS-9 |
| 10 | 704527 | 704739 | - | NC_015385.1 | Treponema succinifaciens DSM 2489 |
| 11 | 132438 | 132647 | + | NC_016633.1 | Sphaerochaeta pleomorpha str. Grapes |
| 12 | 3330609 | 3330812 | + | NC_015578.1 | Treponema primitia ZAS-2 |
| 13 | 2304044 | 2304262 | - | NC_014364.1 | Sediminispirochaeta smaragdinae DSM 11293 |
| 14 | 1791000 | 1791209 | - | NC_015152.1 | Sphaerochaeta globosa str. Buddy |
| 15 | 1748411 | 1748629 | + | NC_023035.1 | Salinispira pacifica |
| 16 | 468897 | 469106 | + | NC_015436.1 | Sphaerochaeta coccoides DSM 17374 |
| 17 | 772328 | 772528 | + | NC_017583.1 | Spirochaeta thermophila DSM 6578 |
| 18 | 265639 | 265848 | + | NC_015921.1 | Borreliella bissettii DN127 |
| 19 | 265735 | 265944 | + | NZ_CP044535.1 | Borrelia maritima |
| 20 | 267872 | 268081 | + | NZ_CP015796.1 | Borreliella mayonii |
| 21 | 266573 | 266782 | + | NZ_CP028861.1 | Borreliella garinii |
| 22 | 2796782 | 2796958 | + | NZ_CP035807.1 | Thiospirochaeta perfilievii |
| 23 | 262641 | 262850 | + | NZ_CP013704.1 | Borrelia anserina Es |
| 24 | 269592 | 269801 | + | NZ_CP011060.1 | Borrelia hermsii CC1 |
| 25 | 282020 | 282229 | + | NC_011244.1 | Borrelia recurrentis A1 |
| 26 | 288794 | 289003 | + | NC_011244.1 | Borrelia recurrentis A1 |
| 27 | 276416 | 276628 | + | NZ_CP028884.1 | Borrelia turcica IST7 |
| 28 | 268803 | 269012 | + | NZ_CP007022.1 | Borrelia parkeri HR1 |
| 29 | 268915 | 269124 | + | NC_008710.1 | Borrelia turicatae 91E135 |
| 30 | 638357 | 638566 | - | NZ_CP024333.1 | Borrelia miyamotoi |
| 31 | 1754038 | 1754241 | + | NZ_CP014229.1 | Desulfovibrio fairfieldensis |
| 32 | 2836390 | 2836587 | - | NZ_CP010311.1 | Geoalkalibacter subterraneus |
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| Neighborhood Conservation Analysis |
* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Representative Chosen(Species): NC_017098.1
| Sr.No. | Domain | Co-occurrence Frequency | No. of species in which domain occurs with smORF | Median distance b/w smORF and domain bearing ORFs | Orientation relative to smORF | PFAM Information |
|---|---|---|---|---|---|---|
| 1 | PF17768.3 | 0.71 | 22 | 957.5 | same-strand | RecJ OB domain |
| 2 | PF01368.22 | 0.71 | 22 | 957.5 | same-strand | DHH family |
| 3 | PF02272.21 | 0.71 | 22 | 957.5 | same-strand | DHHA1 domain |
| 4 | PF01551.24 | 0.61 | 19 | 20 | same-strand | Peptidase family M23 |
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