Result : EXP01297
| Protein Information |
| Information Type | Description |
|---|---|
| Protein name | EXP01297 |
| NCBI Accession ID | NC_017548.1 |
| Organism | Pseudomonas aeruginosa M18 |
| Left | 4352857 |
| Right | 4353048 |
| Strand | + |
| Nucleotide Sequence | ATGGCCATCATGAAGAAAACCGTCGCGCCGAAAGCCGCCAAGCCGGCTCCCGCGGTCGAAACCCGCGAGTCCATCGAAGCGCAGGTCGCCGCCTTCCTCCAGGCCGGCGGCGAGATCCAGAAGATCGCCAAGGGCGTCAGCGGCCAGGTCTACGGCCCGTCGCGGCAGATCACCATCAGCAAGAAGCGCTGA |
| Sequence | MAIMKKTVAPKAAKPAPAVETRESIEAQVAAFLQAGGEIQKIAKGVSGQVYGPSRQITISKKR |
| Source of smORF | Protein-level |
| Function | |
| Pubmed ID | 30796087 |
| Domain | |
| Functional Category | Function not yet assigned |
| Uniprot ID | |
| ORF Length (Amino Acid) | 63 |
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| Conservation Analysis |
No. of Species: 43
| Sr.No. | Left Position | Right Position | Strand | NCBI Accession id | Species Name |
|---|---|---|---|---|---|
| 1 | 1205107 | 1205298 | - | NC_002516.2 | Pseudomonas aeruginosa PAO1 |
| 2 | 1579347 | 1579538 | - | NZ_CP013124.1 | Pseudomonas mendocina S5.2 |
| 3 | 3845192 | 3845383 | + | NZ_CP068551.1 | Pseudomonas khazarica |
| 4 | 1699703 | 1699891 | - | NZ_CP034725.1 | Pseudomonas brassicacearum |
| 5 | 2168101 | 2168289 | + | NZ_CP005960.1 | Pseudomonas mandelii JR-1 |
| 6 | 4992261 | 4992449 | + | NZ_CP014870.1 | Pseudomonas silesiensis |
| 7 | 1735191 | 1735379 | - | NZ_CP051487.1 | Pseudomonas umsongensis |
| 8 | 1680706 | 1680894 | - | NZ_CP035088.1 | Pseudomonas viciae |
| 9 | 1458483 | 1458671 | - | NZ_LR215729.2 | Pseudomonas marincola |
| 10 | 1709323 | 1709511 | - | NZ_CP029608.1 | Pseudomonas kribbensis |
| 11 | 1015531 | 1015719 | + | NZ_CP014205.2 | Pseudomonas glycinae |
| 12 | 4343680 | 4343868 | + | NZ_CP014205.2 | Pseudomonas glycinae |
| 13 | 1686158 | 1686346 | - | NZ_CP062253.1 | Pseudomonas gozinkensis |
| 14 | 1645997 | 1646185 | - | NZ_CP062252.1 | Pseudomonas allokribbensis |
| 15 | 1700202 | 1700390 | - | NZ_CP061079.1 | Pseudomonas chlororaphis |
| 16 | 4482017 | 4482205 | + | NZ_CP070503.1 | Pseudomonas atacamensis |
| 17 | 1784520 | 1784708 | - | NZ_LS999205.1 | Pseudomonas protegens CHA0 |
| 18 | 5253266 | 5253454 | - | NZ_CP014262.1 | Pseudomonas corrugata |
| 19 | 2493702 | 2493890 | + | NZ_CP048810.1 | Pseudomonas bijieensis |
| 20 | 4877476 | 4877664 | + | NZ_CP012400.2 | Pseudomonas yamanorum |
| 21 | 4366743 | 4366931 | + | NZ_CP054205.1 | Pseudomonas rhodesiae |
| 22 | 4367977 | 4368165 | + | NZ_CP023272.1 | Pseudomonas lurida |
| 23 | 3195208 | 3195387 | + | NZ_CP062158.2 | Pseudomonas lundensis |
| 24 | 5082271 | 5082459 | + | NZ_CP018420.1 | Pseudomonas veronii |
| 25 | 4182296 | 4182484 | + | NZ_CP027723.1 | Pseudomonas orientalis |
| 26 | 4651049 | 4651237 | + | NZ_CP027756.1 | Pseudomonas synxantha |
| 27 | 4470928 | 4471116 | + | NZ_CP010896.1 | Pseudomonas simiae |
| 28 | 4470214 | 4470402 | + | NZ_CP068034.2 | Pseudomonas syringae |
| 29 | 1274250 | 1274438 | - | NZ_CP067022.1 | Pseudomonas cannabina pv. alisalensis |
| 30 | 4452449 | 4452637 | + | NZ_CP042804.1 | Pseudomonas amygdali pv. tabaci str. ATCC 11528 |
| 31 | 1750785 | 1750973 | - | NC_004578.1 | Pseudomonas syringae pv. tomato str. DC3000 |
| 32 | 5134245 | 5134433 | + | NZ_CP056030.1 | Pseudomonas eucalypticola |
| 33 | 4557261 | 4557449 | + | NZ_CP007039.1 | Pseudomonas cichorii JBC1 |
| 34 | 4259788 | 4259967 | + | NZ_CP049044.1 | Pseudomonas psychrophila |
| 35 | 2919256 | 2919435 | + | NZ_CP012676.1 | Pseudomonas versuta |
| 36 | 4663160 | 4663348 | - | NZ_CP009533.1 | Pseudomonas rhizosphaerae |
| 37 | 4842596 | 4842787 | + | NZ_CP014158.1 | Pseudomonas citronellolis |
| 38 | 1559067 | 1559258 | - | NZ_CP011835.1 | Azotobacter chroococcum |
| 39 | 1984991 | 1985170 | - | NZ_AP014862.1 | Pseudomonas furukawaii |
| 40 | 2650419 | 2650613 | + | NZ_CP014864.1 | Microbulbifer thermotolerans |
| 41 | 1630676 | 1630855 | - | NZ_CP043311.1 | Pseudomonas lalkuanensis |
| 42 | 2191874 | 2192068 | - | NZ_CP014143.1 | Microbulbifer aggregans |
| 43 | 2892187 | 2892384 | + | NZ_CP019650.1 | Microbulbifer agarilyticus |
| 44 | 957384 | 957584 | + | NZ_CP019343.1 | Oceanicoccus sagamiensis |
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| Neighborhood Conservation Analysis |
* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Representative Chosen(Species): NZ_CP034725.1
| Sr.No. | Domain | Co-occurrence Frequency | No. of species in which domain occurs with smORF | Median distance b/w smORF and domain bearing ORFs | Orientation relative to smORF | PFAM Information |
|---|---|---|---|---|---|---|
| 1 | PF13509.8 | 0.84 | 36 | 339 | opposite-strand | S1 domain |
| 2 | PF17783.3 | 0.84 | 36 | 339 | opposite-strand | CvfB-like winged helix domain |
| 3 | PF19795.1 | 0.63 | 27 | 997.5 | same-strand | Family of unknown function (DUF6279) |
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