Result : EXP01296
| Protein Information |
| Information Type | Description |
|---|---|
| Protein name | EXP01296 |
| NCBI Accession ID | NC_017381.1 |
| Organism | Helicobacter pylori 2018 |
| Left | 64775 |
| Right | 64966 |
| Strand | + |
| Nucleotide Sequence | TTGCTAAACGAGGAAGTGAATAGCTTGAGCGGCCATTTCCATAATTTAGAATCATGGCAAGACGCTAGGAGGGATAAATTTAGCGAGGTGCTGGATAATTTGAAAAGCACTTTCAATGAATTTGATGAAGCCGCGCAAGAGCAAATCGCATGGCTTAAAGAGAGGATTAGGGTTTTAGAGGAAGATTATTAG |
| Sequence | LLNEEVNSLSGHFHNLESWQDARRDKFSEVLDNLKSTFNEFDEAAQEQIAWLKERIRVLEEDY |
| Source of smORF | Protein-level |
| Function | |
| Pubmed ID | 30796087 |
| Domain | |
| Functional Category | Function not yet assigned |
| Uniprot ID | |
| ORF Length (Amino Acid) | 63 |
++ More..
| Conservation Analysis |
No. of Species: 2
| Sr.No. | Left Position | Right Position | Strand | NCBI Accession id | Species Name |
|---|---|---|---|---|---|
| 1 | 62800 | 62967 | + | NC_017379.1 | Helicobacter pylori Puno135 |
| 2 | 171806 | 171982 | + | NC_014810.2 | Helicobacter felis ATCC 49179 |
++ More..
| Neighborhood Conservation Analysis |
* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Representative Chosen(Species): NC_017379.1
| Sr.No. | Domain | Co-occurrence Frequency | No. of species in which domain occurs with smORF | Median distance b/w smORF and domain bearing ORFs | Orientation relative to smORF | PFAM Information |
|---|---|---|---|---|---|---|
| 1 | PF09346.12 | 1.0 | 2 | 1156.0 | same-strand | SMI1 / KNR4 family (SUKH-1) |
| 2 | PF14568.8 | 1.0 | 2 | 1156.0 | same-strand | SMI1-KNR4 cell-wall |
| 3 | PF01580.20 | 1.0 | 2 | 1880.5 | same-strand | FtsK/SpoIIIE family |
| 4 | PF13401.8 | 1.0 | 2 | 1880.5 | same-strand | AAA domain |
++ More..