Result : EXP01270
| Protein Information |
| Information Type | Description |
|---|---|
| Protein name | EXP01270 |
| NCBI Accession ID | NC_000913.3 |
| Organism | Escherichia coli K12 |
| Left | 1445687 |
| Right | 1445872 |
| Strand | + |
| Nucleotide Sequence | ATGAAAATTTTACTGGCTGCGTTGACGTCATCTTTTATGCTGGTTGGCTGTACGCCTCGCATTGAAGTCGCTGCACCTAAGGAACCGATCACTATCAATATGAACGTTAAAATTGAGCATGAGATCATCATCAAGGCAGACAAAGATGTCGAAGAGCTGCTTGAAACTCGTAGCGATCTTTTCTGA |
| Sequence | MKILLAALTSSFMLVGCTPRIEVAAPKEPITINMNVKIEHEIIIKADKDVEELLETRSDLF |
| Source of smORF | Protein-level |
| Function | The ORF matches to the profile of pfam13617. Profile Description: YnbE-like lipoprotein. This family includes lipoproteins similar to E. coli YnbE. Protein in this family are typically 60 amino acids in length and contain an N-terminal lipid attachment site, which has been included in the alignment to increase sensitivity. The specific function of these proteins is unknown. |
| Pubmed ID | 30796087 |
| Domain | CDD:404500 |
| Functional Category | Conserved domain based functional assignment |
| Uniprot ID | P64448 |
| ORF Length (Amino Acid) | 61 |
++ More..
| Conservation Analysis |
No. of Species: 140
| Sr.No. | Left Position | Right Position | Strand | NCBI Accession id | Species Name |
|---|---|---|---|---|---|
| 1 | 1855071 | 1855256 | + | NC_004337.2 | Shigella flexneri 2a str. 301 |
| 2 | 1445687 | 1445872 | + | NC_000913.3 | Escherichia coli str. K-12 substr. MG1655 |
| 3 | 651486 | 651671 | - | NZ_CP057657.1 | Escherichia fergusonii |
| 4 | 2255388 | 2255573 | - | NZ_CP061527.1 | Shigella dysenteriae |
| 5 | 1466529 | 1466714 | + | NZ_AP014857.1 | Escherichia albertii |
| 6 | 1983326 | 1983511 | + | NC_002695.2 | Escherichia coli O157:H7 str. Sakai |
| 7 | 2283997 | 2284182 | - | NZ_LR134340.1 | Escherichia marmotae |
| 8 | 2131636 | 2131821 | + | NZ_AP022508.1 | Enterobacter bugandensis |
| 9 | 2391543 | 2391728 | + | NC_016845.1 | Klebsiella pneumoniae subsp. pneumoniae HS11286 |
| 10 | 1736956 | 1737141 | - | NC_003197.2 | Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 |
| 11 | 2190757 | 2190906 | + | NZ_CP012871.1 | [Enterobacter] lignolyticus |
| 12 | 2819965 | 2820150 | - | NZ_CP065838.1 | Klebsiella quasipneumoniae |
| 13 | 4761477 | 4761650 | + | NZ_CP044098.1 | Citrobacter portucalensis |
| 14 | 2165455 | 2165646 | + | NZ_LR134201.1 | Cedecea lapagei |
| 15 | 1387126 | 1387308 | + | NC_009792.1 | Citrobacter koseri ATCC BAA-895 |
| 16 | 1061351 | 1061500 | - | NZ_CP038469.1 | Citrobacter tructae |
| 17 | 247872 | 248045 | - | NZ_CP033744.1 | Citrobacter freundii |
| 18 | 2414724 | 2414915 | - | NZ_CP054058.1 | Scandinavium goeteborgense |
| 19 | 2522615 | 2522806 | - | NZ_CP023525.1 | Cedecea neteri |
| 20 | 2496844 | 2497005 | - | NZ_CP045845.1 | Kluyvera intermedia |
| 21 | 1037655 | 1037846 | + | NZ_CP023529.1 | Lelliottia amnigena |
| 22 | 3031530 | 3031715 | - | NZ_CP054254.1 | Klebsiella variicola |
| 23 | 4146550 | 4146741 | - | NZ_CP053416.1 | Salmonella bongori |
| 24 | 1758320 | 1758511 | + | NZ_CP012268.1 | Cronobacter muytjensii ATCC 51329 |
| 25 | 2089610 | 2089801 | + | NZ_CP017184.1 | Enterobacter roggenkampii |
| 26 | 404295 | 404486 | - | NZ_CP025034.2 | Enterobacter sp. SGAir0187 |
| 27 | 3039823 | 3040014 | + | NZ_CP045205.1 | Citrobacter telavivensis |
| 28 | 3223999 | 3224169 | - | NZ_CP050508.1 | Raoultella terrigena |
| 29 | 3271056 | 3271208 | - | NZ_CP036175.1 | Klebsiella huaxiensis |
| 30 | 3905981 | 3906172 | - | NZ_LT556085.1 | Citrobacter amalonaticus |
| 31 | 1324523 | 1324714 | - | NZ_CP045769.1 | Enterobacter cancerogenus |
| 32 | 2237157 | 2237333 | - | NZ_CP012264.1 | Cronobacter condimenti 1330 |
| 33 | 3331129 | 3331290 | - | NZ_CP060111.1 | Klebsiella michiganensis |
| 34 | 1353191 | 1353382 | + | NZ_CP017279.1 | Enterobacter ludwigii |
| 35 | 2161903 | 2162094 | + | NZ_CP009756.1 | Enterobacter cloacae |
| 36 | 2169721 | 2169912 | + | NC_015968.1 | Enterobacter soli |
| 37 | 4084301 | 4084507 | - | NZ_CP042941.1 | Atlantibacter hermannii |
| 38 | 2280377 | 2280550 | + | NZ_CP035129.1 | Kosakonia cowanii |
| 39 | 1745529 | 1745720 | - | NC_013716.1 | Citrobacter rodentium ICC168 |
| 40 | 2158278 | 2158451 | + | NZ_CP027986.1 | Enterobacter sichuanensis |
| 41 | 3085878 | 3086054 | - | NZ_CP046672.1 | Raoultella ornithinolytica |
| 42 | 524179 | 524328 | + | NZ_CP045300.1 | Kosakonia arachidis |
| 43 | 2569063 | 2569212 | + | NZ_CP014007.2 | Kosakonia oryzae |
| 44 | 2618294 | 2618443 | - | NZ_CP015113.1 | Kosakonia radicincitans |
| 45 | 2327254 | 2327454 | - | NZ_AP023184.1 | Buttiauxella agrestis |
| 46 | 2310885 | 2311055 | - | NZ_CP012257.1 | Cronobacter universalis NCTC 9529 |
| 47 | 2299079 | 2299270 | - | NZ_CP012266.1 | Cronobacter dublinensis subsp. dublinensis LMG 23823 |
| 48 | 4184905 | 4185081 | + | NZ_CP026047.1 | Raoultella planticola |
| 49 | 2818486 | 2818662 | - | NZ_CP041247.1 | Raoultella electrica |
| 50 | 156404 | 156553 | + | NZ_AP019007.1 | Enterobacter oligotrophicus |
| 51 | 2837229 | 2837405 | - | NZ_LR134494.1 | Serratia quinivorans |
| 52 | 579564 | 579728 | + | NZ_CP016337.1 | Kosakonia sacchari |
| 53 | 2539662 | 2539826 | - | NZ_CP063425.1 | Kosakonia pseudosacchari |
| 54 | 3331098 | 3331289 | + | NZ_CP020388.1 | Pluralibacter gergoviae |
| 55 | 5454259 | 5454435 | - | NZ_CP014136.1 | Gibbsiella quercinecans |
| 56 | 3590134 | 3590283 | + | NZ_CP007044.2 | Chania multitudinisentens RB-25 |
| 57 | 2790588 | 2790737 | - | NZ_CP048784.1 | Serratia liquefaciens |
| 58 | 2367215 | 2367412 | + | NZ_CP071320.1 | Serratia ureilytica |
| 59 | 2743823 | 2744020 | - | NZ_CP038662.1 | Serratia nematodiphila |
| 60 | 3835996 | 3836148 | + | NZ_CP065640.1 | Serratia rubidaea |
| 61 | 1463518 | 1463667 | - | NZ_CP028271.1 | Mixta intestinalis |
| 62 | 2149607 | 2149798 | + | NZ_CP013990.1 | Leclercia adecarboxylata |
| 63 | 2020682 | 2020858 | - | NZ_LN907827.1 | Erwinia gerundensis |
| 64 | 1916283 | 1916474 | - | NC_013961.1 | Erwinia amylovora CFBP1430 |
| 65 | 2039995 | 2040192 | - | NZ_CP016948.1 | Serratia surfactantfaciens |
| 66 | 2249741 | 2249935 | + | NZ_CP050150.1 | Hafnia alvei |
| 67 | 4909762 | 4909938 | - | NZ_CP011254.1 | Serratia fonticola |
| 68 | 2788209 | 2788406 | - | NZ_LT906479.1 | Serratia ficaria |
| 69 | 1419705 | 1419857 | - | NZ_CP067057.1 | Rahnella aceris |
| 70 | 2021837 | 2022028 | - | NZ_CP023567.1 | Erwinia pyrifoliae |
| 71 | 2790014 | 2790190 | - | NC_015567.1 | Serratia plymuthica AS9 |
| 72 | 1881506 | 1881697 | + | NC_010694.1 | Erwinia tasmaniensis Et1/99 |
| 73 | 2243512 | 2243697 | - | NZ_CP061511.1 | Mixta calida |
| 74 | 2588510 | 2588662 | - | NC_014306.1 | Erwinia billingiae Eb661 |
| 75 | 1978205 | 1978366 | - | NZ_CP011602.1 | Phytobacter ursingii |
| 76 | 1989712 | 1989900 | + | NZ_CP045720.1 | Pantoea eucalypti |
| 77 | 2271435 | 2271599 | + | NC_017554.1 | Pantoea ananatis PA13 |
| 78 | 2334696 | 2334881 | - | NZ_CP026377.1 | Mixta gaviniae |
| 79 | 1979780 | 1979968 | + | NZ_CP038853.1 | Pantoea vagans |
| 80 | 1821333 | 1821527 | + | NZ_LS483470.1 | Leminorella richardii |
| 81 | 3036681 | 3036842 | + | NZ_CP051548.1 | Phytobacter diazotrophicus |
| 82 | 1735317 | 1735475 | + | NZ_CP029185.2 | Limnobaculum parvum |
| 83 | 1718612 | 1718770 | + | NZ_CP034752.1 | Jinshanibacter zhutongyuii |
| 84 | 3612802 | 3612972 | + | NZ_CP019706.1 | Pantoea alhagi |
| 85 | 3578697 | 3578858 | - | NZ_CP023706.1 | Edwardsiella tarda |
| 86 | 1796381 | 1796542 | + | NZ_LR134531.1 | Pragia fontium |
| 87 | 1902645 | 1902806 | - | NZ_CP016043.1 | Edwardsiella hoshinae |
| 88 | 2402572 | 2402766 | - | NZ_CP011118.1 | Yersinia enterocolitica |
| 89 | 2252376 | 2252570 | + | NZ_CP043727.1 | Yersinia canariae |
| 90 | 1765828 | 1766022 | + | NZ_CP032487.1 | Yersinia hibernica |
| 91 | 718160 | 718354 | - | NZ_CP009787.1 | Yersinia rohdei |
| 92 | 1337179 | 1337364 | - | NC_006512.1 | Idiomarina loihiensis L2TR |
| 93 | 1468670 | 1468852 | - | NZ_CP015839.1 | Marinobacterium aestuarii |
| 94 | 1351486 | 1351668 | - | NZ_CP019650.1 | Microbulbifer agarilyticus |
| 95 | 2354833 | 2355027 | - | NZ_CP046293.1 | Yersinia intermedia |
| 96 | 675913 | 676068 | - | NZ_AP017928.1 | Methylocaldum marinum |
| 97 | 3581842 | 3582036 | - | NZ_CP054043.1 | Yersinia mollaretii ATCC 43969 |
| 98 | 708123 | 708320 | + | NZ_CP031416.1 | Gallaecimonas mangrovi |
| 99 | 363011 | 363181 | + | NZ_CP009781.1 | Yersinia aldovae 670-83 |
| 100 | 4238021 | 4238215 | - | NZ_CP007230.1 | Yersinia similis |
| 101 | 4611545 | 4611706 | + | NZ_CP028897.1 | Dongshaea marina |
| 102 | 2429260 | 2429466 | - | NZ_CP048796.1 | Providencia vermicola |
| 103 | 3188936 | 3189109 | - | NZ_CP023536.1 | Providencia alcalifaciens |
| 104 | 2010506 | 2010700 | + | NZ_LR134373.1 | Yersinia pseudotuberculosis |
| 105 | 1569753 | 1569917 | - | NC_011027.1 | Chlorobaculum parvum NCIB 8327 |
| 106 | 1282618 | 1282791 | + | NZ_CP011494.1 | Marinobacter psychrophilus |
| 107 | 2720608 | 2720757 | + | NZ_CP029736.1 | Providencia rettgeri |
| 108 | 1387933 | 1388097 | + | NZ_CP031123.2 | Providencia huaxiensis |
| 109 | 3106866 | 3107030 | - | NZ_CP014476.1 | Methylomonas denitrificans |
| 110 | 1632558 | 1632707 | - | NZ_CP060401.1 | Xenorhabdus nematophila |
| 111 | 2356798 | 2356968 | - | NC_010506.1 | Shewanella woodyi ATCC 51908 |
| 112 | 5907455 | 5907610 | - | NC_007645.1 | Hahella chejuensis KCTC 2396 |
| 113 | 6739672 | 6739863 | - | NZ_CP014158.1 | Pseudomonas citronellolis |
| 114 | 2531125 | 2531304 | + | NC_005126.1 | Photorhabdus laumondii subsp. laumondii TTO1 |
| 115 | 3945734 | 3945883 | - | NZ_CP012621.1 | Zobellella denitrificans |
| 116 | 5893982 | 5894173 | - | NZ_CP047698.1 | Pseudomonas knackmussii |
| 117 | 2372559 | 2372765 | - | NZ_LS483422.1 | Providencia heimbachae |
| 118 | 5974190 | 5974381 | - | NC_002516.2 | Pseudomonas aeruginosa PAO1 |
| 119 | 970474 | 970632 | + | NZ_CP016176.1 | Xenorhabdus hominickii |
| 120 | 2081143 | 2081307 | - | NC_008260.1 | Alcanivorax borkumensis SK2 |
| 121 | 2946117 | 2946278 | + | NC_010334.1 | Shewanella halifaxensis HAW-EB4 |
| 122 | 880690 | 880869 | + | NZ_CP013187.1 | Pseudoalteromonas phenolica |
| 123 | 846104 | 846265 | - | NZ_CP012362.1 | Oblitimonas alkaliphila |
| 124 | 1049986 | 1050135 | - | NZ_CP033040.1 | Thiomicrorhabdus indica |
| 125 | 672669 | 672851 | + | NZ_CP032090.1 | Pseudoalteromonas donghaensis |
| 126 | 2966590 | 2966745 | + | NZ_CP060084.1 | Teredinibacter haidensis |
| 127 | 1986684 | 1986851 | + | NZ_CP018800.1 | Mariprofundus ferrinatatus |
| 128 | 1942331 | 1942489 | - | NZ_CP047349.1 | Proteus terrae subsp. cibarius |
| 129 | 2353257 | 2353418 | - | NC_013892.1 | Xenorhabdus bovienii SS-2004 |
| 130 | 2597461 | 2597643 | + | NZ_CP019628.1 | Pseudoalteromonas aliena |
| 131 | 2156549 | 2156713 | + | NZ_FO704550.1 | Xenorhabdus doucetiae |
| 132 | 1683188 | 1683349 | + | NZ_CP014782.1 | Shewanella psychrophila |
| 133 | 3134081 | 3134245 | + | NC_011566.1 | Shewanella piezotolerans WP3 |
| 134 | 3052606 | 3052788 | - | NZ_CP011025.1 | Pseudoalteromonas arctica A 37-1-2 |
| 135 | 2468548 | 2468745 | - | NC_007481.1 | Pseudoalteromonas translucida |
| 136 | 2758753 | 2758950 | - | NZ_CP011036.1 | Pseudoalteromonas nigrifaciens |
| 137 | 266433 | 266594 | - | NC_020888.1 | Thalassolituus oleivorans MIL-1 |
| 138 | 1093389 | 1093538 | + | NZ_CP041783.1 | Shewanella donghaensis |
| 139 | 2961881 | 2962042 | + | NC_016901.1 | Shewanella baltica OS678 |
| 140 | 1899178 | 1899327 | - | NZ_CP041036.1 | Shewanella polaris |
| 141 | 3005291 | 3005440 | + | NC_014012.1 | Shewanella violacea DSS12 |
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| Neighborhood Conservation Analysis |
* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Representative Chosen(Species): NC_004337.2
| Sr.No. | Domain | Co-occurrence Frequency | No. of species in which domain occurs with smORF | Median distance b/w smORF and domain bearing ORFs | Orientation relative to smORF | PFAM Information |
|---|---|---|---|---|---|---|
| 1 | PF02826.21 | 0.74 | 104 | 2889 | opposite-strand | D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain |
| 2 | PF00389.32 | 0.74 | 103 | 2892.5 | opposite-strand | D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain |
| 3 | PF11739.10 | 0.98 | 137 | 15.0 | same-strand | Dicarboxylate transport |
| 4 | PF07027.14 | 0.98 | 137 | 10.0 | same-strand | Protein of unknown function (DUF1318) |
++ More..