Result : EXP01263
| Protein Information |
| Information Type | Description |
|---|---|
| Protein name | EXP01263 |
| NCBI Accession ID | NC_017381.1 |
| Organism | Helicobacter pylori 2018 |
| Left | 1048248 |
| Right | 1048478 |
| Strand | - |
| Nucleotide Sequence | ATGATGCAATCTTTAAGTTTATTAAACCAGTTGGGTGCTAAAATTGATGAATTGATTGAAAAAATCCAAAAACAAGAAGAAGAGTTGAACGCTTTACGCCAAGCAAACACCACCCTAAATGCACAAAATGAAGAAAAAGACATTCAAATCGCTATTTTATACGATGAATTGAGCGCTAAAGATAAGGGTATTCAAGGTCTTTATGACAAAATCTCTGATTTATTGTCATAA |
| Sequence | MMQSLSLLNQLGAKIDELIEKIQKQEEELNALRQANTTLNAQNEEKDIQIAILYDELSAKDKGIQGLYDKISDLLS |
| Source of smORF | Protein-level |
| Function | |
| Pubmed ID | 30796087 |
| Domain | |
| Functional Category | Function not yet assigned |
| Uniprot ID | |
| ORF Length (Amino Acid) | 76 |
++ More..
| Conservation Analysis |
No. of Species: 4
| Sr.No. | Left Position | Right Position | Strand | NCBI Accession id | Species Name |
|---|---|---|---|---|---|
| 1 | 1117548 | 1117775 | - | NC_017379.1 | Helicobacter pylori Puno135 |
| 2 | 366941 | 367168 | - | NC_008229.1 | Helicobacter acinonychis str. Sheeba |
| 3 | 1581116 | 1581343 | - | NC_017735.1 | Helicobacter cetorum MIT 99-5656 |
| 4 | 1338623 | 1338850 | - | NC_014810.2 | Helicobacter felis ATCC 49179 |
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| Neighborhood Conservation Analysis |
* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Representative Chosen(Species): NC_017379.1
| Sr.No. | Domain | Co-occurrence Frequency | No. of species in which domain occurs with smORF | Median distance b/w smORF and domain bearing ORFs | Orientation relative to smORF | PFAM Information |
|---|---|---|---|---|---|---|
| 1 | PF00270.31 | 0.75 | 3 | 234 | same-strand | DEAD/DEAH box helicase |
| 2 | PF04851.17 | 0.75 | 3 | 234 | same-strand | Type III restriction enzyme, res subunit |
| 3 | PF18074.3 | 0.75 | 3 | 234 | same-strand | Primosomal protein N C-terminal domain |
| 4 | PF18319.3 | 0.75 | 3 | 234 | same-strand | PriA DNA helicase Cys-rich region (CRR) domain |
| 5 | PF17764.3 | 0.75 | 3 | 234 | same-strand | 3'DNA-binding domain (3'BD) |
++ More..