Result : EXP01249
| Protein Information |
| Information Type | Description |
|---|---|
| Protein name | EXP01249 |
| NCBI Accession ID | NC_000913.3 |
| Organism | Escherichia coli K12 |
| Left | 556661 |
| Right | 556927 |
| Strand | - |
| Nucleotide Sequence | TTGAAAACACGCTACAGGCGTGCGTTGAATATCATGATCCACAGGATGAGTAACATGGCGACATTTTCTTTAGGTAAACATCCGCACGTTGAGCTGTGCGACTTGCTGAAACTGGAAGGCTGGAGCGAAAGCGGCGCGCAGGCGAAAATCGCGATTGCCGAAGGCCAGGTGAAAGTCGACGGTGCGGTTGAAACGCGCAAACGCTGCAAAATCGTCGCCGGTCAGACAGTGAGTTTTGCAGGTCACAGCGTACAGGTTGTTGCCTGA |
| Sequence | LKTRYRRALNIMIHRMSNMATFSLGKHPHVELCDLLKLEGWSESGAQAKIAIAEGQVKVDGAVETRKRCKIVAGQTVSFAGHSVQVVA |
| Source of smORF | Protein-level |
| Function | The ORF matches to the profile of cl09940. Profile Description: N/A. This domain is found at the C-terminus of fungal tyrosyl-tRNA synthetases. It binds to group I introns. |
| Pubmed ID | 30796087 |
| Domain | CDD:415814 |
| Functional Category | Conserved domain based functional assignment |
| Uniprot ID | |
| ORF Length (Amino Acid) | 88 |
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| Conservation Analysis |
No. of Species: 49
| Sr.No. | Left Position | Right Position | Strand | NCBI Accession id | Species Name |
|---|---|---|---|---|---|
| 1 | 556661 | 556927 | - | NC_000913.3 | Escherichia coli str. K-12 substr. MG1655 |
| 2 | 1226220 | 1226486 | - | NZ_LR134340.1 | Escherichia marmotae |
| 3 | 475172 | 475438 | - | NC_004337.2 | Shigella flexneri 2a str. 301 |
| 4 | 649114 | 649380 | - | NC_002695.2 | Escherichia coli O157:H7 str. Sakai |
| 5 | 549053 | 549319 | - | NZ_AP014857.1 | Escherichia albertii |
| 6 | 4150002 | 4150223 | - | NZ_CP057657.1 | Escherichia fergusonii |
| 7 | 2435295 | 2435537 | + | NC_009792.1 | Citrobacter koseri ATCC BAA-895 |
| 8 | 4358869 | 4359111 | + | NZ_CP045205.1 | Citrobacter telavivensis |
| 9 | 623753 | 623995 | - | NC_013716.1 | Citrobacter rodentium ICC168 |
| 10 | 2753054 | 2753296 | - | NZ_LT556085.1 | Citrobacter amalonaticus |
| 11 | 602491 | 602733 | - | NC_003197.2 | Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 |
| 12 | 3106364 | 3106606 | - | NZ_CP053416.1 | Salmonella bongori |
| 13 | 1208017 | 1208250 | - | NZ_CP012264.1 | Cronobacter condimenti 1330 |
| 14 | 2214523 | 2214789 | + | NZ_CP027107.1 | Cronobacter sakazakii |
| 15 | 2922574 | 2922807 | + | NZ_CP013940.1 | Cronobacter malonaticus LMG 23826 |
| 16 | 3959469 | 3959747 | + | NZ_CP041247.1 | Raoultella electrica |
| 17 | 1211557 | 1211790 | - | NZ_CP012257.1 | Cronobacter universalis NCTC 9529 |
| 18 | 4191755 | 4191982 | + | NZ_CP054254.1 | Klebsiella variicola |
| 19 | 1286863 | 1287090 | - | NC_016845.1 | Klebsiella pneumoniae subsp. pneumoniae HS11286 |
| 20 | 1216381 | 1216614 | - | NZ_CP012266.1 | Cronobacter dublinensis subsp. dublinensis LMG 23823 |
| 21 | 3924016 | 3924243 | + | NZ_CP065838.1 | Klebsiella quasipneumoniae |
| 22 | 533254 | 533475 | + | NZ_CP042941.1 | Atlantibacter hermannii |
| 23 | 3395589 | 3395855 | + | NZ_CP045845.1 | Kluyvera intermedia |
| 24 | 4443858 | 4444136 | + | NZ_CP036175.1 | Klebsiella huaxiensis |
| 25 | 2891811 | 2892038 | + | NC_017910.1 | Shimwellia blattae DSM 4481 = NBRC 105725 |
| 26 | 2829978 | 2830220 | + | NZ_CP012268.1 | Cronobacter muytjensii ATCC 51329 |
| 27 | 1345691 | 1345924 | + | NZ_CP014136.1 | Gibbsiella quercinecans |
| 28 | 3664186 | 3664428 | - | NZ_AP019007.1 | Enterobacter oligotrophicus |
| 29 | 3239265 | 3239489 | - | NZ_AP023184.1 | Buttiauxella agrestis |
| 30 | 2553044 | 2553292 | - | NZ_CP023706.1 | Edwardsiella tarda |
| 31 | 861140 | 861388 | - | NZ_CP016043.1 | Edwardsiella hoshinae |
| 32 | 1195182 | 1195412 | - | NZ_CP046293.1 | Yersinia intermedia |
| 33 | 2520243 | 2520473 | - | NZ_CP054043.1 | Yersinia mollaretii ATCC 43969 |
| 34 | 4111535 | 4111765 | - | NZ_CP009787.1 | Yersinia rohdei |
| 35 | 3267621 | 3267875 | + | NZ_CP025799.1 | Dickeya zeae |
| 36 | 1265926 | 1266180 | - | NZ_LS483422.1 | Providencia heimbachae |
| 37 | 1395826 | 1396059 | + | NZ_CP065745.1 | Aeromonas allosaccharophila |
| 38 | 2430233 | 2430466 | + | NZ_LR134376.1 | Aeromonas encheleia |
| 39 | 1205985 | 1206218 | + | NZ_CP044060.1 | Aeromonas veronii |
| 40 | 2235086 | 2235319 | - | NZ_CP050851.1 | Aeromonas hydrophila |
| 41 | 1414880 | 1415113 | + | NZ_CP051883.1 | Aeromonas salmonicida |
| 42 | 2871398 | 2871619 | + | NZ_CP023406.1 | Luteimonas chenhongjianii |
| 43 | 3017832 | 3018050 | - | NZ_CP047385.1 | Pandoraea fibrosis |
| 44 | 3152617 | 3152835 | + | NC_023018.2 | Pandoraea pnomenusa |
| 45 | 2125943 | 2126161 | - | NZ_LT906435.1 | Pandoraea sputorum |
| 46 | 3293759 | 3293977 | + | NZ_CP011253.3 | Pandoraea oxalativorans |
| 47 | 3062490 | 3062711 | + | NZ_CP009727.1 | Burkholderia mallei |
| 48 | 2895395 | 2895616 | - | NZ_CP008781.1 | Burkholderia pseudomallei |
| 49 | 2247943 | 2248161 | + | NZ_CP009795.1 | Burkholderia dolosa AU0158 |
| 50 | 897726 | 897944 | - | NC_010622.1 | Paraburkholderia phymatum STM815 |
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| Neighborhood Conservation Analysis |
* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Representative Chosen(Species): NC_000913.3
| Sr.No. | Domain | Co-occurrence Frequency | No. of species in which domain occurs with smORF | Median distance b/w smORF and domain bearing ORFs | Orientation relative to smORF | PFAM Information |
|---|---|---|---|---|---|---|
| 1 | PF00160.23 | 0.61 | 30 | 2224 | same-strand | Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD |
| 2 | PF01406.21 | 0.63 | 31 | 665.0 | opposite-strand | tRNA synthetases class I (C) catalytic domain |
| 3 | PF09190.13 | 0.63 | 31 | 665.0 | opposite-strand | DALR domain |
| 4 | PF02882.21 | 0.71 | 35 | -26.0 | same-strand | Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain |
| 5 | PF00763.25 | 0.71 | 35 | -26.0 | same-strand | Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain |
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