Protein Information |
Information Type | Description |
---|---|
Protein name | EXP01247 |
NCBI Accession ID | NC_017381.1 |
Organism | Helicobacter pylori 2018 |
Left | 966785 |
Right | 967066 |
Strand | - |
Nucleotide Sequence | ATGCTAGCTTTAGAAATTTATATTGATATTTGCTTGAAAGACGCTTTAATAGATTATCTGTTTGAAAAAGGCTTTGATGATTTTTTTTATGTGGAATGCTATAAATACGCCGCTTCTTCATTGCTCTTAAGCCAAAAAGAGCAGGTGAGCGGGCGTAAAGACTACGCTAAATTCAAGCTTTTTTTAAGCGAGGAAGTCGCTTTACCTCTAGCCCAAGCGTTAAAAAACCAGTTCGCTTCTAAAGGAATGAAATTGTTTTATTCTCAAACGCATGGGTTGTAA |
Sequence | MLALEIYIDICLKDALIDYLFEKGFDDFFYVECYKYAASSLLLSQKEQVSGRKDYAKFKLFLSEEVALPLAQALKNQFASKGMKLFYSQTHGL |
Source of smORF | Protein-level |
Function | |
Pubmed ID | 30796087 |
Domain | |
Functional Category | Function not yet assigned |
Uniprot ID | |
ORF Length (Amino Acid) | 93 |
Conservation Analysis |
Sr.No. | Left Position | Right Position | Strand | NCBI Accession id | Species Name |
---|---|---|---|---|---|
1 | 979155 | 979436 | - | NC_017379.1 | Helicobacter pylori Puno135 |
2 | 906863 | 907144 | - | NC_008229.1 | Helicobacter acinonychis str. Sheeba |
3 | 1422982 | 1423257 | - | NC_017735.1 | Helicobacter cetorum MIT 99-5656 |
4 | 1485490 | 1485723 | - | NZ_CP014991.1 | Helicobacter himalayensis |
Neighborhood Conservation Analysis |
Sr.No. | Domain | Co-occurrence Frequency | No. of species in which domain occurs with smORF | Median distance b/w smORF and domain bearing ORFs | Orientation relative to smORF | PFAM Information |
---|---|---|---|---|---|---|
1 | PF00873.21 | 1.0 | 4 | 20.0 | same-strand | AcrB/AcrD/AcrF family |
2 | PF02321.20 | 1.0 | 4 | 4147.5 | same-strand | Outer membrane efflux protein |
3 | PF02092.19 | 0.75 | 3 | 5434 | same-strand | Glycyl-tRNA synthetase beta subunit |