Result : EXP01247
| Protein Information |
| Information Type | Description |
|---|---|
| Protein name | EXP01247 |
| NCBI Accession ID | NC_017381.1 |
| Organism | Helicobacter pylori 2018 |
| Left | 966785 |
| Right | 967066 |
| Strand | - |
| Nucleotide Sequence | ATGCTAGCTTTAGAAATTTATATTGATATTTGCTTGAAAGACGCTTTAATAGATTATCTGTTTGAAAAAGGCTTTGATGATTTTTTTTATGTGGAATGCTATAAATACGCCGCTTCTTCATTGCTCTTAAGCCAAAAAGAGCAGGTGAGCGGGCGTAAAGACTACGCTAAATTCAAGCTTTTTTTAAGCGAGGAAGTCGCTTTACCTCTAGCCCAAGCGTTAAAAAACCAGTTCGCTTCTAAAGGAATGAAATTGTTTTATTCTCAAACGCATGGGTTGTAA |
| Sequence | MLALEIYIDICLKDALIDYLFEKGFDDFFYVECYKYAASSLLLSQKEQVSGRKDYAKFKLFLSEEVALPLAQALKNQFASKGMKLFYSQTHGL |
| Source of smORF | Protein-level |
| Function | |
| Pubmed ID | 30796087 |
| Domain | |
| Functional Category | Function not yet assigned |
| Uniprot ID | |
| ORF Length (Amino Acid) | 93 |
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| Conservation Analysis |
No. of Species: 4
| Sr.No. | Left Position | Right Position | Strand | NCBI Accession id | Species Name |
|---|---|---|---|---|---|
| 1 | 979155 | 979436 | - | NC_017379.1 | Helicobacter pylori Puno135 |
| 2 | 906863 | 907144 | - | NC_008229.1 | Helicobacter acinonychis str. Sheeba |
| 3 | 1422982 | 1423257 | - | NC_017735.1 | Helicobacter cetorum MIT 99-5656 |
| 4 | 1485490 | 1485723 | - | NZ_CP014991.1 | Helicobacter himalayensis |
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| Neighborhood Conservation Analysis |
* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Representative Chosen(Species): NC_017379.1
| Sr.No. | Domain | Co-occurrence Frequency | No. of species in which domain occurs with smORF | Median distance b/w smORF and domain bearing ORFs | Orientation relative to smORF | PFAM Information |
|---|---|---|---|---|---|---|
| 1 | PF00873.21 | 1.0 | 4 | 20.0 | same-strand | AcrB/AcrD/AcrF family |
| 2 | PF02321.20 | 1.0 | 4 | 4147.5 | same-strand | Outer membrane efflux protein |
| 3 | PF02092.19 | 0.75 | 3 | 5434 | same-strand | Glycyl-tRNA synthetase beta subunit |
++ More..