Protein Information |
Information Type | Description |
---|---|
Protein name | EXP01222 |
NCBI Accession ID | NZ_CP009472.1 |
Organism | Lactococcus lactis strain AI06 |
Left | 789514 |
Right | 789783 |
Strand | + |
Nucleotide Sequence | TTGGAGGAAAAAATGGATAACCAAAATCAAGAAATAGGAAAAATTGTTGACATTCGTGAAAAAGTTCAAGCACACTTGGGTGAAACGATTGAAATTACTTCACAATTTGGTCGTAAACGCGAAAATCGTCATAAAGTGAACTTGATTGAAGCCTATGCAACACATTTCATTATTGAAAACATTCCGGCTCGTGGTCCCAAAACAACTGAGTCATATCAATATGCTGACATTTTGACTCAAACTATTTTAATTCATTATCCAAACGCATAA |
Sequence | LEEKMDNQNQEIGKIVDIREKVQAHLGETIEITSQFGRKRENRHKVNLIEAYATHFIIENIPARGPKTTESYQYADILTQTILIHYPNA |
Source of smORF | Protein-level |
Function | The ORF matches to the profile of cl01852. Profile Description: Biofilm formation stimulator VEG. VEG is a family that is highly conserved among Gram-positive bacteria. It stimulates biofilm formation through inducing transcription of the tapA-sipW-tasA operon. The products of this operon are resposible for production of the amyloid fibre (TasA) component of the biofilm. Veg or a Veg-induced protein acts as an antirepressor of SinR - part of the major overall biofilm transcriptional control system - to regulate and stimulate biofilm formation. Veg is transcribed at high levels during both exponential growth and sporulation. |
Pubmed ID | 30796087 |
Domain | CDD:413095 |
Functional Category | Conserved domain based functional assignment |
Uniprot ID | |
ORF Length (Amino Acid) | 89 |
Conservation Analysis |
Sr.No. | Left Position | Right Position | Strand | NCBI Accession id | Species Name |
---|---|---|---|---|---|
1 | 699429 | 699698 | + | NC_022369.1 | Lactococcus lactis subsp. cremoris KW2 |
2 | 832205 | 832474 | + | NZ_CP070872.1 | Lactococcus taiwanensis |
3 | 335693 | 335950 | + | NZ_CP032627.1 | Lactococcus allomyrinae |
4 | 1003146 | 1003421 | + | NZ_CP065637.1 | Lactococcus garvieae |
5 | 603204 | 603452 | + | NZ_CP017194.1 | Lactococcus carnosus |
6 | 622331 | 622579 | + | NZ_CP017195.1 | Lactococcus paracarnosus |
7 | 1695276 | 1695524 | + | NZ_CP023392.1 | Lactococcus raffinolactis |
Neighborhood Conservation Analysis |
Sr.No. | Domain | Co-occurrence Frequency | No. of species in which domain occurs with smORF | Median distance b/w smORF and domain bearing ORFs | Orientation relative to smORF | PFAM Information |
---|---|---|---|---|---|---|
1 | PF13419.8 | 1.0 | 7 | 4084 | same-strand | Haloacid dehalogenase-like hydrolase |
2 | PF01368.22 | 1.0 | 7 | 2009 | same-strand | DHH family |
3 | PF02272.21 | 1.0 | 7 | 2009 | same-strand | DHHA1 domain |
4 | PF03948.16 | 1.0 | 7 | 1475 | same-strand | Ribosomal protein L9, C-terminal domain |
5 | PF01281.21 | 1.0 | 7 | 1475 | same-strand | Ribosomal protein L9, N-terminal domain |
6 | PF03796.17 | 1.0 | 7 | 100 | same-strand | DnaB-like helicase C terminal domain |
7 | PF00772.23 | 1.0 | 7 | 100 | same-strand | DnaB-like helicase N terminal domain |
8 | PF13481.8 | 1.0 | 7 | 100 | same-strand | AAA domain |
9 | PF02390.19 | 1.0 | 7 | 971 | same-strand | Putative methyltransferase |
10 | PF03477.18 | 1.0 | 7 | 1658 | same-strand | ATP cone domain |
11 | PF07261.13 | 1.0 | 7 | 2143 | same-strand | Replication initiation and membrane attachment |
12 | PF07319.13 | 1.0 | 7 | 3309 | same-strand | Primosomal protein DnaI N-terminus |