Result : EXP01221
| Protein Information |
| Information Type | Description |
|---|---|
| Protein name | EXP01221 |
| NCBI Accession ID | NC_017548.1 |
| Organism | Pseudomonas aeruginosa M18 |
| Left | 5989588 |
| Right | 5989887 |
| Strand | + |
| Nucleotide Sequence | TTGCGCCAGAACGAGGAACGCCCGATGAGCGAACAGGACGACAACCAGGAAGACGGCTTCGCCGAGGAAAAACTGATCCAGGCCATCGAGAACCAGATCGAAAGCGAGAATCCGCCGGCGGCGCGCGCCGTGTTCAACAAGCTGACCCTGGTCGGCTACGAGCGCGACGAGGCGCTGGGCATGATGGCCTACGTGCTGGCCCACGAGATCAACGCCATGCTCGCCGCCGACCGCGCTTTCGACAGCGCCGGCTACGAGCATGCGCTGCGTGCCCTGCCGACGTTGCCGGACGACGAATGA |
| Sequence | LRQNEERPMSEQDDNQEDGFAEEKLIQAIENQIESENPPAARAVFNKLTLVGYERDEALGMMAYVLAHEINAMLAADRAFDSAGYEHALRALPTLPDDE |
| Source of smORF | Protein-level |
| Function | |
| Pubmed ID | 30796087 |
| Domain | |
| Functional Category | Function not yet assigned |
| Uniprot ID | |
| ORF Length (Amino Acid) | 99 |
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| Conservation Analysis |
No. of Species: 55
| Sr.No. | Left Position | Right Position | Strand | NCBI Accession id | Species Name |
|---|---|---|---|---|---|
| 1 | 5934746 | 5935045 | + | NC_002516.2 | Pseudomonas aeruginosa PAO1 |
| 2 | 912853 | 913134 | - | NZ_CP048833.1 | Pseudomonas multiresinivorans |
| 3 | 5863255 | 5863539 | + | NZ_CP047698.1 | Pseudomonas knackmussii |
| 4 | 6560805 | 6561101 | + | NZ_CP061079.1 | Pseudomonas chlororaphis |
| 5 | 6701386 | 6701658 | + | NZ_CP014158.1 | Pseudomonas citronellolis |
| 6 | 5968269 | 5968547 | + | NZ_AP014862.1 | Pseudomonas furukawaii |
| 7 | 4924101 | 4924376 | + | NZ_CP060009.1 | Pseudomonas sediminis |
| 8 | 2616564 | 2616848 | - | NZ_CP014205.2 | Pseudomonas glycinae |
| 9 | 5617111 | 5617395 | + | NZ_CP071706.1 | Pseudomonas donghuensis |
| 10 | 5573181 | 5573465 | + | NZ_CP046621.1 | Pseudomonas alkylphenolica |
| 11 | 532043 | 532327 | + | NZ_CP049044.1 | Pseudomonas psychrophila |
| 12 | 5683499 | 5683783 | + | NZ_CP027723.1 | Pseudomonas orientalis |
| 13 | 4755600 | 4755875 | + | NZ_CP013124.1 | Pseudomonas mendocina S5.2 |
| 14 | 6297543 | 6297827 | + | NZ_CP062253.1 | Pseudomonas gozinkensis |
| 15 | 5874456 | 5874734 | + | NZ_CP043311.1 | Pseudomonas lalkuanensis |
| 16 | 6616262 | 6616546 | + | NZ_CP018420.1 | Pseudomonas veronii |
| 17 | 5757649 | 5757933 | + | NZ_CP054205.1 | Pseudomonas rhodesiae |
| 18 | 5912638 | 5912922 | + | NZ_CP010896.1 | Pseudomonas simiae |
| 19 | 4393029 | 4393313 | + | NZ_CP012676.1 | Pseudomonas versuta |
| 20 | 275614 | 275910 | - | NZ_CP056030.1 | Pseudomonas eucalypticola |
| 21 | 6293209 | 6293493 | + | NZ_CP027756.1 | Pseudomonas synxantha |
| 22 | 4766127 | 4766411 | + | NZ_CP062158.2 | Pseudomonas lundensis |
| 23 | 6425838 | 6426122 | + | NZ_CP035088.1 | Pseudomonas viciae |
| 24 | 6300861 | 6301145 | + | NZ_CP062252.1 | Pseudomonas allokribbensis |
| 25 | 6620727 | 6621011 | + | NZ_LS999205.1 | Pseudomonas protegens CHA0 |
| 26 | 6508892 | 6509176 | + | NZ_CP034725.1 | Pseudomonas brassicacearum |
| 27 | 5877413 | 5877697 | + | NZ_CP023272.1 | Pseudomonas lurida |
| 28 | 2611753 | 2612031 | - | NZ_CP070505.1 | Pseudomonas toyotomiensis |
| 29 | 6841208 | 6841492 | - | NZ_CP012400.2 | Pseudomonas yamanorum |
| 30 | 3777389 | 3777691 | - | NZ_CP009533.1 | Pseudomonas rhizosphaerae |
| 31 | 4150554 | 4150838 | - | NZ_CP005960.1 | Pseudomonas mandelii JR-1 |
| 32 | 6581179 | 6581463 | + | NZ_CP014870.1 | Pseudomonas silesiensis |
| 33 | 3232570 | 3232854 | - | NZ_CP045302.1 | Azotobacter salinestris |
| 34 | 4448519 | 4448803 | - | NZ_CP048810.1 | Pseudomonas bijieensis |
| 35 | 4838519 | 4838779 | + | NC_012560.1 | Azotobacter vinelandii DJ |
| 36 | 6646772 | 6647056 | + | NZ_CP051487.1 | Pseudomonas umsongensis |
| 37 | 5675975 | 5676277 | + | NC_008027.1 | Pseudomonas entomophila L48 |
| 38 | 272079 | 272354 | - | NZ_CP068551.1 | Pseudomonas khazarica |
| 39 | 3284136 | 3284420 | + | NZ_CP014262.1 | Pseudomonas corrugata |
| 40 | 4765318 | 4765620 | + | NZ_CP009365.1 | Pseudomonas soli |
| 41 | 253090 | 253365 | - | NC_004578.1 | Pseudomonas syringae pv. tomato str. DC3000 |
| 42 | 171789 | 172064 | + | NZ_CP068034.2 | Pseudomonas syringae |
| 43 | 207716 | 207991 | - | NZ_AP022642.1 | Pseudomonas otitidis |
| 44 | 371315 | 371605 | - | NZ_CP070503.1 | Pseudomonas atacamensis |
| 45 | 217254 | 217553 | - | NC_021505.1 | Pseudomonas putida NBRC 14164 |
| 46 | 212857 | 213132 | - | NZ_CP007039.1 | Pseudomonas cichorii JBC1 |
| 47 | 6078939 | 6079223 | + | NZ_CP029608.1 | Pseudomonas kribbensis |
| 48 | 91818 | 92093 | + | NZ_CP042804.1 | Pseudomonas amygdali pv. tabaci str. ATCC 11528 |
| 49 | 3842105 | 3842407 | - | NZ_CP031146.1 | Pseudomonas plecoglossicida |
| 50 | 189120 | 189422 | - | NZ_CP024159.1 | Pseudomonas mosselii |
| 51 | 4487857 | 4488138 | + | NZ_LR215729.2 | Pseudomonas marincola |
| 52 | 179183 | 179485 | - | NZ_CP022562.1 | Pseudomonas monteilii |
| 53 | 5694171 | 5694446 | + | NZ_CP067022.1 | Pseudomonas cannabina pv. alisalensis |
| 54 | 4157547 | 4157807 | + | NZ_CP011835.1 | Azotobacter chroococcum |
| 55 | 868388 | 868678 | + | NZ_CP012362.1 | Oblitimonas alkaliphila |
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| Neighborhood Conservation Analysis |
* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Representative Chosen(Species): NZ_CP061079.1
| Sr.No. | Domain | Co-occurrence Frequency | No. of species in which domain occurs with smORF | Median distance b/w smORF and domain bearing ORFs | Orientation relative to smORF | PFAM Information |
|---|---|---|---|---|---|---|
| 1 | PF18918.2 | 0.93 | 51 | 151 | same-strand | Family of unknown function (DUF5669) |
| 2 | PF01295.20 | 0.82 | 45 | 610 | same-strand | Adenylate cyclase, class-I |
| 3 | PF12633.9 | 0.82 | 45 | 610 | same-strand | Adenylate cyclase NT domain |
| 4 | PF01272.21 | 0.8 | 44 | 3483.0 | opposite-strand | Transcription elongation factor, GreA/GreB, C-term |
| 5 | PF14760.8 | 0.8 | 44 | 3483.0 | opposite-strand | Rnk N-terminus |
| 6 | PF01491.18 | 0.78 | 43 | 4235 | opposite-strand | Frataxin-like domain |
| 7 | PF02602.17 | 0.69 | 38 | 4586.0 | opposite-strand | Uroporphyrinogen-III synthase HemD |
| 8 | PF01379.22 | 0.76 | 42 | 3651.0 | opposite-strand | Porphobilinogen deaminase, dipyromethane cofactor binding domain |
| 9 | PF03900.17 | 0.76 | 42 | 3651.0 | opposite-strand | Porphobilinogen deaminase, C-terminal domain |
| 10 | PF00072.26 | 0.78 | 43 | 2770 | opposite-strand | Response regulator receiver domain |
| 11 | PF04397.17 | 0.78 | 43 | 2767 | opposite-strand | LytTr DNA-binding domain |
| 12 | PF00206.22 | 0.85 | 47 | 896 | same-strand | Lyase |
| 13 | PF14698.8 | 0.85 | 47 | 896 | same-strand | Argininosuccinate lyase C-terminal |
| 14 | PF13417.8 | 0.65 | 36 | 126.0 | opposite-strand | Glutathione S-transferase, N-terminal domain |
| 15 | PF13409.8 | 0.65 | 36 | 126.0 | opposite-strand | Glutathione S-transferase, N-terminal domain |
| 16 | PF02798.22 | 0.65 | 36 | 126.0 | opposite-strand | Glutathione S-transferase, N-terminal domain |
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