Result : EXP01217
| Protein Information |
| Information Type | Description |
|---|---|
| Protein name | EXP01217 |
| NCBI Accession ID | NC_017548.1 |
| Organism | Pseudomonas aeruginosa M18 |
| Left | 3792717 |
| Right | 3792995 |
| Strand | - |
| Nucleotide Sequence | ATGAAAACCTGGATCGTTCTGCCCGTCCTTGCCCTGACCCTGGCCGGCTGCGCCGGCAAGACCGCCTACCGGGAGAACTGCGCCGACCAGTTGGACGCGGCCTGGAAGGAACTCGACCTGGCCAAGGCCGAAGGTTTCGCCGGCACCGTCAGCTACTCGAAGGCCCTGACCCTGCTCACCGGGGCCAAGACCCAGCAGCAGTTCGAGGCCTACGAGGGCTGCACCAGCAAGGCCGAGAAGGCGCGCTTCTATATCCGCGAGTCGCGCGCCGGGCGCTGA |
| Sequence | MKTWIVLPVLALTLAGCAGKTAYRENCADQLDAAWKELDLAKAEGFAGTVSYSKALTLLTGAKTQQQFEAYEGCTSKAEKARFYIRESRAGR |
| Source of smORF | Protein-level |
| Function | |
| Pubmed ID | 30796087 |
| Domain | |
| Functional Category | Function not yet assigned |
| Uniprot ID | |
| ORF Length (Amino Acid) | 92 |
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| Conservation Analysis |
No. of Species: 57
| Sr.No. | Left Position | Right Position | Strand | NCBI Accession id | Species Name |
|---|---|---|---|---|---|
| 1 | 1786888 | 1787166 | + | NC_002516.2 | Pseudomonas aeruginosa PAO1 |
| 2 | 2918284 | 2918562 | - | NZ_CP009365.1 | Pseudomonas soli |
| 3 | 1951975 | 1952253 | + | NZ_CP046621.1 | Pseudomonas alkylphenolica |
| 4 | 2195266 | 2195544 | + | NZ_CP043311.1 | Pseudomonas lalkuanensis |
| 5 | 1808406 | 1808684 | + | NZ_CP056030.1 | Pseudomonas eucalypticola |
| 6 | 1965060 | 1965338 | + | NC_008027.1 | Pseudomonas entomophila L48 |
| 7 | 1467996 | 1468274 | - | NZ_CP031146.1 | Pseudomonas plecoglossicida |
| 8 | 2117683 | 2117961 | + | NZ_CP022562.1 | Pseudomonas monteilii |
| 9 | 3904640 | 3904918 | - | NZ_CP071706.1 | Pseudomonas donghuensis |
| 10 | 1993744 | 1994022 | + | NZ_CP027756.1 | Pseudomonas synxantha |
| 11 | 1838869 | 1839147 | + | NZ_CP010896.1 | Pseudomonas simiae |
| 12 | 2037296 | 2037574 | + | NZ_CP054205.1 | Pseudomonas rhodesiae |
| 13 | 1757235 | 1757513 | + | NZ_CP027723.1 | Pseudomonas orientalis |
| 14 | 1791276 | 1791554 | + | NZ_CP023272.1 | Pseudomonas lurida |
| 15 | 3637030 | 3637308 | - | NZ_CP024159.1 | Pseudomonas mosselii |
| 16 | 3994873 | 3995151 | - | NC_021505.1 | Pseudomonas putida NBRC 14164 |
| 17 | 1899373 | 1899651 | + | NZ_CP018420.1 | Pseudomonas veronii |
| 18 | 4857860 | 4858138 | - | NZ_CP061079.1 | Pseudomonas chlororaphis |
| 19 | 4602609 | 4602887 | + | NZ_CP070505.1 | Pseudomonas toyotomiensis |
| 20 | 4568496 | 4568774 | - | NZ_CP012400.2 | Pseudomonas yamanorum |
| 21 | 4721682 | 4721960 | - | NZ_CP014870.1 | Pseudomonas silesiensis |
| 22 | 3619863 | 3620141 | - | NZ_CP007039.1 | Pseudomonas cichorii JBC1 |
| 23 | 2954772 | 2955050 | - | NZ_CP060009.1 | Pseudomonas sediminis |
| 24 | 2322738 | 2323016 | + | NZ_CP042804.1 | Pseudomonas amygdali pv. tabaci str. ATCC 11528 |
| 25 | 2435796 | 2436074 | + | NZ_CP068551.1 | Pseudomonas khazarica |
| 26 | 3687711 | 3687989 | - | NZ_CP067022.1 | Pseudomonas cannabina pv. alisalensis |
| 27 | 384896 | 385174 | + | NZ_CP009533.1 | Pseudomonas rhizosphaerae |
| 28 | 4655700 | 4655978 | - | NZ_CP062253.1 | Pseudomonas gozinkensis |
| 29 | 124177 | 124455 | - | NZ_CP014205.2 | Pseudomonas glycinae |
| 30 | 3731622 | 3731900 | - | NZ_CP068034.2 | Pseudomonas syringae |
| 31 | 1907601 | 1907879 | + | NZ_CP070503.1 | Pseudomonas atacamensis |
| 32 | 4443216 | 4443494 | - | NZ_CP029608.1 | Pseudomonas kribbensis |
| 33 | 5145791 | 5146069 | - | NZ_CP051487.1 | Pseudomonas umsongensis |
| 34 | 4700792 | 4701070 | - | NZ_CP062252.1 | Pseudomonas allokribbensis |
| 35 | 2734109 | 2734387 | - | NZ_CP013124.1 | Pseudomonas mendocina S5.2 |
| 36 | 2489838 | 2490116 | + | NC_004578.1 | Pseudomonas syringae pv. tomato str. DC3000 |
| 37 | 900802 | 901083 | + | NZ_CP012676.1 | Pseudomonas versuta |
| 38 | 1936917 | 1937195 | + | NZ_AP022642.1 | Pseudomonas otitidis |
| 39 | 1937924 | 1938202 | - | NZ_CP005960.1 | Pseudomonas mandelii JR-1 |
| 40 | 4931851 | 4932129 | - | NZ_LS999205.1 | Pseudomonas protegens CHA0 |
| 41 | 2281981 | 2282271 | - | NZ_CP048810.1 | Pseudomonas bijieensis |
| 42 | 2355822 | 2356100 | + | NZ_CP049044.1 | Pseudomonas psychrophila |
| 43 | 3634242 | 3634520 | - | NZ_AP014862.1 | Pseudomonas furukawaii |
| 44 | 1880789 | 1881079 | + | NZ_CP035088.1 | Pseudomonas viciae |
| 45 | 5470087 | 5470377 | + | NZ_CP014262.1 | Pseudomonas corrugata |
| 46 | 1912417 | 1912707 | + | NZ_CP034725.1 | Pseudomonas brassicacearum |
| 47 | 1636737 | 1637015 | + | NZ_CP062158.2 | Pseudomonas lundensis |
| 48 | 2831338 | 2831616 | - | NZ_LR215729.2 | Pseudomonas marincola |
| 49 | 477723 | 477968 | + | NZ_CP012362.1 | Oblitimonas alkaliphila |
| 50 | 5035562 | 5035840 | - | NZ_CP048833.1 | Pseudomonas multiresinivorans |
| 51 | 4492877 | 4493155 | - | NZ_CP014158.1 | Pseudomonas citronellolis |
| 52 | 1940308 | 1940586 | + | NZ_CP047698.1 | Pseudomonas knackmussii |
| 53 | 1007423 | 1007686 | - | NC_010995.1 | Cellvibrio japonicus Ueda107 |
| 54 | 3611092 | 3611331 | - | NZ_CP037953.1 | Permianibacter aggregans |
| 55 | 1476955 | 1477230 | + | NC_018868.3 | Simiduia agarivorans SA1 = DSM 21679 |
| 56 | 499723 | 500013 | + | NZ_CP025120.1 | Kangiella profundi |
| 57 | 2044745 | 2044993 | - | NZ_CP012418.1 | Kangiella sediminilitoris |
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| Neighborhood Conservation Analysis |
* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Representative Chosen(Species): NZ_CP046621.1
| Sr.No. | Domain | Co-occurrence Frequency | No. of species in which domain occurs with smORF | Median distance b/w smORF and domain bearing ORFs | Orientation relative to smORF | PFAM Information |
|---|---|---|---|---|---|---|
| 1 | PF02702.19 | 0.63 | 36 | 2112.0 | same-strand | Osmosensitive K+ channel His kinase sensor domain |
| 2 | PF13493.8 | 0.63 | 36 | 2112.0 | same-strand | Domain of unknown function (DUF4118) |
| 3 | PF02518.28 | 0.63 | 36 | 2112.0 | same-strand | Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase |
| 4 | PF00512.27 | 0.63 | 36 | 2112.0 | same-strand | His Kinase A (phospho-acceptor) domain |
| 5 | PF00582.28 | 0.63 | 36 | 2112.0 | same-strand | Universal stress protein family |
| 6 | PF00072.26 | 0.65 | 37 | 1370 | same-strand | Response regulator receiver domain |
| 7 | PF00486.30 | 0.65 | 37 | 1370 | same-strand | Transcriptional regulatory protein, C terminal |
| 8 | PF01734.24 | 0.72 | 41 | 217 | opposite-strand | Patatin-like phospholipase |
| 9 | PF00015.23 | 0.61 | 35 | 2208 | opposite-strand | Methyl-accepting chemotaxis protein (MCP) signalling domain |
| 10 | PF00672.27 | 0.61 | 35 | 2208 | opposite-strand | HAMP domain |
| 11 | PF13622.8 | 0.67 | 38 | 966.5 | same-strand | Thioesterase-like superfamily |
| 12 | PF05235.16 | 0.68 | 39 | 78 | same-strand | CHAD domain |
++ More..