Result : EXP01179
| Protein Information |
| Information Type | Description |
|---|---|
| Protein name | EXP01179 |
| NCBI Accession ID | ABAX03000013.1 |
| Organism | Anaerostipes caccae (strain DSM 14662 / NCIMB 13811 / L1-92) |
| Left | 115919 |
| Right | 116182 |
| Strand | - |
| Nucleotide Sequence | ATGGAGGAATGTATTATGGAAATTACAAGTCTGCTGCCGGGCGTGAAAATTGTAAAAGAGGACGGAGAAGTAAAAGAAGACGTTTTTATCTCCCAGGGGGACAAAGTTAAGGTGACAACTGTGGATGAAACGGTGACGGGGACTTTCATGCTTGTGGAGTTTGCACGTTACAGTGAAGAAGATGATATTCTCCATATGGTGAGAGATGAAGAAGGATTTGCTGTGCCCTTCGACCAGATCATTGATATTGTAAGAGCAGATTAA |
| Sequence | MEECIMEITSLLPGVKIVKEDGEVKEDVFISQGDKVKVTTVDETVTGTFMLVEFARYSEEDDILHMVRDEEGFAVPFDQIIDIVRAD |
| Source of smORF | Protein-level |
| Function | |
| Pubmed ID | 31841667 |
| Domain | |
| Functional Category | Function not yet assigned |
| Uniprot ID | |
| ORF Length (Amino Acid) | 87 |
++ More..
| Conservation Analysis |
No. of Species: 2
| Sr.No. | Left Position | Right Position | Strand | NCBI Accession id | Species Name |
|---|---|---|---|---|---|
| 1 | 3045823 | 3046086 | - | NZ_CP036345.1 | Anaerostipes caccae L1-92 |
| 2 | 415711 | 415956 | + | NZ_CP040058.1 | Anaerostipes rhamnosivorans |
++ More..
| Neighborhood Conservation Analysis |
* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Representative Chosen(Species): NZ_CP036345.1
| Sr.No. | Domain | Co-occurrence Frequency | No. of species in which domain occurs with smORF | Median distance b/w smORF and domain bearing ORFs | Orientation relative to smORF | PFAM Information |
|---|---|---|---|---|---|---|
| 1 | PF00313.24 | 1.0 | 2 | 108.0 | opposite-strand | 'Cold-shock' DNA-binding domain |
| 2 | PF01047.24 | 1.0 | 2 | 720.5 | opposite-strand | MarR family |
| 3 | PF01554.20 | 1.0 | 2 | 1159.5 | opposite-strand | MatE |
| 4 | PF00375.20 | 1.0 | 2 | 3008.0 | opposite-strand | Sodium:dicarboxylate symporter family |
++ More..