* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Representative Chosen(Species): NZ_CP068170.1
Sr.No. |
Domain |
Co-occurrence Frequency |
No. of species in which domain occurs with smORF |
Median distance b/w smORF and domain bearing ORFs |
Orientation relative to smORF |
PFAM Information |
1
|
PF00849.24
|
1.0
|
2
|
2302.5
|
same-strand
|
RNA pseudouridylate synthase
|
2
|
PF00122.22
|
1.0
|
2
|
320.0
|
same-strand
|
E1-E2 ATPase
|
3
|
PF00009.29
|
1.0
|
2
|
1526.0
|
same-strand
|
Elongation factor Tu GTP binding domain
|
4
|
PF16658.7
|
1.0
|
2
|
1526.0
|
same-strand
|
Class II release factor RF3, C-terminal domain
|
5
|
PF03144.27
|
1.0
|
2
|
1526.0
|
same-strand
|
Elongation factor Tu domain 2
|
6
|
PF01926.25
|
1.0
|
2
|
1526.0
|
same-strand
|
50S ribosome-binding GTPase
|
++ More..