* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Representative Chosen(Species): NZ_CP040530.1
Sr.No. |
Domain |
Co-occurrence Frequency |
No. of species in which domain occurs with smORF |
Median distance b/w smORF and domain bearing ORFs |
Orientation relative to smORF |
PFAM Information |
1
|
PF01103.25
|
1.0
|
3
|
2264
|
same-strand
|
Omp85 superfamily domain
|
2
|
PF11810.10
|
1.0
|
3
|
1213
|
opposite-strand
|
Domain of unknown function (DUF3332)
|
3
|
PF07681.14
|
1.0
|
3
|
670
|
opposite-strand
|
DoxX
|
4
|
PF04170.14
|
0.67
|
2
|
1672.5
|
opposite-strand
|
NlpE N-terminal domain
|
5
|
PF07690.18
|
1.0
|
3
|
632
|
same-strand
|
Major Facilitator Superfamily
|
6
|
PF12706.9
|
1.0
|
3
|
2103
|
same-strand
|
Beta-lactamase superfamily domain
|
7
|
PF02614.16
|
1.0
|
3
|
4043
|
opposite-strand
|
Glucuronate isomerase
|
8
|
PF13407.8
|
0.67
|
2
|
5289.5
|
same-strand
|
Periplasmic binding protein domain
|
9
|
PF00356.23
|
0.67
|
2
|
5289.5
|
same-strand
|
Bacterial regulatory proteins, lacI family
|
++ More..