* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Representative Chosen(Species): NZ_AP024085.1
Sr.No. |
Domain |
Co-occurrence Frequency |
No. of species in which domain occurs with smORF |
Median distance b/w smORF and domain bearing ORFs |
Orientation relative to smORF |
PFAM Information |
1
|
PF00488.23
|
1.0
|
3
|
4036
|
same-strand
|
MutS domain V
|
2
|
PF05192.20
|
1.0
|
3
|
4036
|
same-strand
|
MutS domain III
|
3
|
PF01624.22
|
1.0
|
3
|
4036
|
same-strand
|
MutS domain I
|
4
|
PF05190.20
|
1.0
|
3
|
4036
|
same-strand
|
MutS family domain IV
|
5
|
PF05188.19
|
0.67
|
2
|
4078.5
|
same-strand
|
MutS domain II
|
6
|
PF10628.11
|
0.67
|
2
|
3526.5
|
same-strand
|
Outer spore coat protein E (CotE)
|
7
|
PF00478.27
|
1.0
|
3
|
1963
|
same-strand
|
IMP dehydrogenase / GMP reductase domain
|
8
|
PF06133.13
|
1.0
|
3
|
1526
|
same-strand
|
Control of competence regulator ComK, YlbF/YmcA
|
9
|
PF04055.23
|
1.0
|
3
|
85
|
same-strand
|
Radical SAM superfamily
|
10
|
PF00919.22
|
1.0
|
3
|
85
|
same-strand
|
Uncharacterized protein family UPF0004
|
11
|
PF01938.22
|
1.0
|
3
|
85
|
same-strand
|
TRAM domain
|
12
|
PF04232.14
|
0.67
|
2
|
93.5
|
same-strand
|
Stage V sporulation protein S (SpoVS)
|
13
|
PF13277.8
|
1.0
|
3
|
394
|
same-strand
|
YmdB-like protein
|
14
|
PF12072.10
|
1.0
|
3
|
1234
|
same-strand
|
RNase Y N-terminal region
|
15
|
PF01966.24
|
1.0
|
3
|
1234
|
same-strand
|
HD domain
|
16
|
PF00013.31
|
1.0
|
3
|
1234
|
same-strand
|
KH domain
|
17
|
PF00154.23
|
0.67
|
2
|
4173.5
|
same-strand
|
recA bacterial DNA recombination protein
|
18
|
PF08423.13
|
0.67
|
2
|
4173.5
|
same-strand
|
Rad51
|
19
|
PF00149.30
|
0.67
|
2
|
242.0
|
same-strand
|
Calcineurin-like phosphoesterase
|
++ More..