Result : EXP01158
| Protein Information |
| Information Type | Description |
|---|---|
| Protein name | EXP01158 |
| NCBI Accession ID | AP009048.1 |
| Organism | Escherichia coli (strain K12) |
| Left | 1067286 |
| Right | 1067513 |
| Strand | - |
| Nucleotide Sequence | ATGCCAACTCAAGAAGCGAAAGCTCATCACGTCGGTGAATGGGCATCTCTGCGCAATACGTCGCCGGAAATAGCCGAGGCCATTTTCGAAGTCGCCGGGTACGACGAAAAAATGGCGGAAAAGATTTGGGAAGAAGGTAGTGATGAAGTGTTAGTCAAAGCCTTTGCTAAGACCGATAAAGATTCGCTTTTTTGGGGCGAACAGACCATCGAACGTAAAAACGTTTAA |
| Sequence | MPTQEAKAHHVGEWASLRNTSPEIAEAIFEVAGYDEKMAEKIWEEGSDEVLVKAFAKTDKDSLFWGEQTIERKNV |
| Source of smORF | Protein-level |
| Function | The protein encoded by this ORF is under the control of the RNA Polymerase sigma factor RpoS which plays a role in general stress response. It is abundantly expressed in the stationary phase. Pubmed:28522802 The ORF matches to the profile of cl23921. Profile Description: YccJ-like protein. hypothetical protein; Provisional |
| Pubmed ID | 31841667 |
| Domain | CDD:420092 |
| Functional Category | Manually curated function from literature |
| Uniprot ID | P0AB17 |
| ORF Length (Amino Acid) | 75 |
++ More..
| Conservation Analysis |
No. of Species: 100
| Sr.No. | Left Position | Right Position | Strand | NCBI Accession id | Species Name |
|---|---|---|---|---|---|
| 1 | 2683483 | 2683710 | + | NZ_CP061527.1 | Shigella dysenteriae |
| 2 | 1727938 | 1728165 | - | NZ_LR134340.1 | Escherichia marmotae |
| 3 | 140093 | 140320 | - | NZ_CP057657.1 | Escherichia fergusonii |
| 4 | 1055165 | 1055392 | - | NC_004337.2 | Shigella flexneri 2a str. 301 |
| 5 | 1066864 | 1067091 | - | NC_000913.3 | Escherichia coli str. K-12 substr. MG1655 |
| 6 | 1245359 | 1245586 | - | NC_002695.2 | Escherichia coli O157:H7 str. Sakai |
| 7 | 1077894 | 1078121 | - | NZ_AP014857.1 | Escherichia albertii |
| 8 | 3375433 | 3375660 | - | NZ_LT556085.1 | Citrobacter amalonaticus |
| 9 | 3698066 | 3698293 | + | NZ_CP045205.1 | Citrobacter telavivensis |
| 10 | 1171290 | 1171517 | - | NC_013716.1 | Citrobacter rodentium ICC168 |
| 11 | 3599421 | 3599648 | - | NZ_CP053416.1 | Salmonella bongori |
| 12 | 1899514 | 1899741 | + | NC_009792.1 | Citrobacter koseri ATCC BAA-895 |
| 13 | 558466 | 558693 | + | NZ_CP044098.1 | Citrobacter portucalensis |
| 14 | 4555283 | 4555510 | - | NZ_CP033744.1 | Citrobacter freundii |
| 15 | 1702178 | 1702405 | - | NZ_AP022508.1 | Enterobacter bugandensis |
| 16 | 1204963 | 1205190 | - | NC_003197.2 | Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 |
| 17 | 1727427 | 1727654 | - | NZ_CP027986.1 | Enterobacter sichuanensis |
| 18 | 1668479 | 1668706 | - | NZ_CP017184.1 | Enterobacter roggenkampii |
| 19 | 842294 | 842521 | + | NZ_CP025034.2 | Enterobacter sp. SGAir0187 |
| 20 | 1713070 | 1713297 | - | NZ_CP009756.1 | Enterobacter cloacae |
| 21 | 1915516 | 1915743 | - | NZ_CP043318.1 | Enterobacter chengduensis |
| 22 | 582853 | 583080 | - | NZ_CP023529.1 | Lelliottia amnigena |
| 23 | 1786318 | 1786545 | + | NZ_CP027107.1 | Cronobacter sakazakii |
| 24 | 2535924 | 2536151 | + | NZ_CP013940.1 | Cronobacter malonaticus LMG 23826 |
| 25 | 1613893 | 1614120 | + | NZ_CP038469.1 | Citrobacter tructae |
| 26 | 1303879 | 1304106 | + | NZ_CP016337.1 | Kosakonia sacchari |
| 27 | 3897398 | 3897625 | + | NZ_CP051548.1 | Phytobacter diazotrophicus |
| 28 | 3432759 | 3432986 | - | NZ_CP042941.1 | Atlantibacter hermannii |
| 29 | 3253998 | 3254225 | + | NZ_LR134475.1 | Klebsiella aerogenes |
| 30 | 2421585 | 2421812 | + | NZ_CP012268.1 | Cronobacter muytjensii ATCC 51329 |
| 31 | 1657404 | 1657631 | - | NZ_CP012266.1 | Cronobacter dublinensis subsp. dublinensis LMG 23823 |
| 32 | 1972443 | 1972670 | - | NC_016845.1 | Klebsiella pneumoniae subsp. pneumoniae HS11286 |
| 33 | 1762058 | 1762285 | - | NZ_CP063425.1 | Kosakonia pseudosacchari |
| 34 | 1683324 | 1683551 | - | NC_015968.1 | Enterobacter soli |
| 35 | 3820252 | 3820479 | + | NZ_CP060111.1 | Klebsiella michiganensis |
| 36 | 1608158 | 1608385 | - | NZ_CP012257.1 | Cronobacter universalis NCTC 9529 |
| 37 | 3281731 | 3281958 | + | NZ_CP065838.1 | Klebsiella quasipneumoniae |
| 38 | 3531445 | 3531672 | + | NZ_CP054254.1 | Klebsiella variicola |
| 39 | 3343022 | 3343249 | + | NZ_CP041247.1 | Raoultella electrica |
| 40 | 4197086 | 4197313 | - | NZ_AP019007.1 | Enterobacter oligotrophicus |
| 41 | 1817419 | 1817646 | - | NZ_CP012871.1 | [Enterobacter] lignolyticus |
| 42 | 2846055 | 2846282 | + | NZ_CP054058.1 | Scandinavium goeteborgense |
| 43 | 3718715 | 3718942 | - | NZ_CP026047.1 | Raoultella planticola |
| 44 | 3526834 | 3527061 | + | NZ_CP046672.1 | Raoultella ornithinolytica |
| 45 | 883544 | 883771 | - | NZ_CP017279.1 | Enterobacter ludwigii |
| 46 | 3079128 | 3079355 | + | NZ_CP013990.1 | Leclercia adecarboxylata |
| 47 | 2921803 | 2922030 | + | NZ_CP035129.1 | Kosakonia cowanii |
| 48 | 3639343 | 3639570 | + | NZ_CP050508.1 | Raoultella terrigena |
| 49 | 1605959 | 1606186 | - | NZ_CP012264.1 | Cronobacter condimenti 1330 |
| 50 | 1200055 | 1200282 | + | NZ_CP045300.1 | Kosakonia arachidis |
| 51 | 3162207 | 3162434 | + | NZ_CP023525.1 | Cedecea neteri |
| 52 | 1839394 | 1839621 | - | NZ_CP015113.1 | Kosakonia radicincitans |
| 53 | 3358974 | 3359201 | + | NZ_CP014007.2 | Kosakonia oryzae |
| 54 | 3647378 | 3647605 | + | NZ_CP036175.1 | Klebsiella huaxiensis |
| 55 | 2937235 | 2937462 | + | NZ_LR134201.1 | Cedecea lapagei |
| 56 | 1786330 | 1786557 | + | NZ_CP045769.1 | Enterobacter cancerogenus |
| 57 | 3054989 | 3055216 | - | NZ_CP020388.1 | Pluralibacter gergoviae |
| 58 | 2870267 | 2870494 | + | NZ_AP023184.1 | Buttiauxella agrestis |
| 59 | 2836420 | 2836647 | + | NZ_CP045845.1 | Kluyvera intermedia |
| 60 | 3274157 | 3274384 | - | NZ_CP040428.1 | Jejubacter calystegiae |
| 61 | 1764541 | 1764771 | - | NC_014306.1 | Erwinia billingiae Eb661 |
| 62 | 2516535 | 2516762 | + | NC_017910.1 | Shimwellia blattae DSM 4481 = NBRC 105725 |
| 63 | 4360413 | 4360643 | - | NZ_CP049115.1 | Pantoea stewartii |
| 64 | 1436944 | 1437174 | - | NZ_CP034148.1 | Pantoea agglomerans |
| 65 | 2687235 | 2687465 | + | NZ_CP045720.1 | Pantoea eucalypti |
| 66 | 2634588 | 2634818 | + | NZ_CP038853.1 | Pantoea vagans |
| 67 | 2956465 | 2956695 | + | NC_017554.1 | Pantoea ananatis PA13 |
| 68 | 883377 | 883607 | - | NZ_CP028271.1 | Mixta intestinalis |
| 69 | 4214048 | 4214278 | + | NZ_CP019706.1 | Pantoea alhagi |
| 70 | 1638083 | 1638313 | - | NZ_CP061511.1 | Mixta calida |
| 71 | 1715915 | 1716145 | - | NZ_CP026377.1 | Mixta gaviniae |
| 72 | 1524818 | 1525048 | - | NZ_CP023567.1 | Erwinia pyrifoliae |
| 73 | 1483188 | 1483418 | - | NC_013961.1 | Erwinia amylovora CFBP1430 |
| 74 | 2349300 | 2349530 | + | NC_010694.1 | Erwinia tasmaniensis Et1/99 |
| 75 | 1933479 | 1933706 | - | NZ_CP009056.1 | Frischella perrara |
| 76 | 1466409 | 1466639 | - | NZ_LN907827.1 | Erwinia gerundensis |
| 77 | 2687447 | 2687662 | - | NZ_LS483422.1 | Providencia heimbachae |
| 78 | 1449534 | 1449761 | + | NZ_CP007445.1 | Gilliamella apicola |
| 79 | 5037701 | 5037913 | - | NZ_CP014136.1 | Gibbsiella quercinecans |
| 80 | 3326196 | 3326408 | - | NZ_CP023536.1 | Providencia alcalifaciens |
| 81 | 5290153 | 5290350 | + | NZ_CP011254.1 | Serratia fonticola |
| 82 | 2098594 | 2098791 | - | NZ_CP071320.1 | Serratia ureilytica |
| 83 | 2298426 | 2298623 | + | NZ_CP016948.1 | Serratia surfactantfaciens |
| 84 | 3001124 | 3001321 | + | NZ_CP038662.1 | Serratia nematodiphila |
| 85 | 4384615 | 4384812 | + | NZ_CP065640.1 | Serratia rubidaea |
| 86 | 2052477 | 2052692 | - | NZ_CP050150.1 | Hafnia alvei |
| 87 | 240529 | 240744 | + | NZ_CP023706.1 | Edwardsiella tarda |
| 88 | 2181834 | 2182049 | + | NZ_CP016043.1 | Edwardsiella hoshinae |
| 89 | 3025904 | 3026101 | + | NZ_LT906479.1 | Serratia ficaria |
| 90 | 1594143 | 1594358 | - | NC_012779.2 | Edwardsiella ictaluri 93-146 |
| 91 | 3099522 | 3099719 | + | NZ_CP048784.1 | Serratia liquefaciens |
| 92 | 3106547 | 3106744 | + | NZ_LR134494.1 | Serratia quinivorans |
| 93 | 3831211 | 3831426 | - | NZ_CP029736.1 | Providencia rettgeri |
| 94 | 3498714 | 3498929 | - | NZ_CP006664.1 | Edwardsiella anguillarum ET080813 |
| 95 | 3111650 | 3111847 | + | NC_015567.1 | Serratia plymuthica AS9 |
| 96 | 2970286 | 2970483 | + | NZ_CP006569.1 | Sodalis praecaptivus |
| 97 | 2219140 | 2219352 | - | NZ_CP034752.1 | Jinshanibacter zhutongyuii |
| 98 | 2063903 | 2064115 | - | NZ_CP029185.2 | Limnobaculum parvum |
| 99 | 2018072 | 2018284 | + | NZ_CP067057.1 | Rahnella aceris |
| 100 | 2331046 | 2331258 | - | NZ_LR134531.1 | Pragia fontium |
| 101 | 1652738 | 1652950 | + | NZ_LS483470.1 | Leminorella richardii |
++ More..
| Neighborhood Conservation Analysis |
* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Representative Chosen(Species): NZ_CP061527.1
| Sr.No. | Domain | Co-occurrence Frequency | No. of species in which domain occurs with smORF | Median distance b/w smORF and domain bearing ORFs | Orientation relative to smORF | PFAM Information |
|---|---|---|---|---|---|---|
| 1 | PF03358.17 | 0.7 | 70 | 21 | same-strand | NADPH-dependent FMN reductase |
| 2 | PF00258.27 | 0.7 | 70 | 21.0 | same-strand | Flavodoxin |
| 3 | PF00328.24 | 0.64 | 64 | 38 | opposite-strand | Histidine phosphatase superfamily (branch 2) |
++ More..