Result : EXP01114

Protein Information

• Protein name: EXP01114
• NCBI Accession ID: NC_016810.1
• Organism: Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344
• Left: 3422443
• Right: 3422607
• Strand: +
• Nucleotide Sequence: ATGAGCAAAAAATCGGCGAAGAAACGTCAGCCCGTGGTAAAACCTGCCGTACAGGAGGCGATGAGCGCCGCTGTGCCGCTGGGCTATGAAGAGATGCTAACCGAACTGGAAGCCATCGTGGCGGACGCCGAAGCCCGGCTGGCAGAAGAAGAGGCCGCAGCCTGA
• Sequence: MSKKSAKKRQPVVKPAVQEAMSAAVPLGYEEMLTELEAIVADAEARLAEEEAAA
• Source of smORF: Protein-level
• Pubmed ID: Venturini et al 2020
• Functional Category: Function not yet assigned
• Uniprot ID: P42625
• ORF Length (Amino Acid): 54

Conservation Analysis

No. of Species: 25

Sr.No.	Left Position	Right Position	Strand	NCBI Accession id	Species Name
1	3401745	3401909	+	NC_003197.2	Salmonella enterica subsp. enterica serovar Typhimurium str. LT2
2	1263386	1263550	+	NZ_CP053416.1	Salmonella bongori
3	3244429	3244593	+	NZ_AP014857.1	Escherichia albertii
4	4168073	4168237	+	NC_009792.1	Citrobacter koseri ATCC BAA-895
5	4028090	4028251	-	NZ_CP038469.1	Citrobacter tructae
6	3010852	3011001	-	NZ_CP044098.1	Citrobacter portucalensis
7	3994800	3994964	+	NC_002695.2	Escherichia coli O157:H7 str. Sakai
8	548498	548662	-	NZ_CP061527.1	Shigella dysenteriae
9	3768703	3768867	+	NZ_LR134340.1	Escherichia marmotae
10	3255043	3255207	+	NC_000913.3	Escherichia coli str. K-12 substr. MG1655
11	3246470	3246634	+	NC_004337.2	Shigella flexneri 2a str. 301
12	2064328	2064477	+	NZ_CP033744.1	Citrobacter freundii
13	5260394	5260555	+	NZ_CP045205.1	Citrobacter telavivensis
14	1850306	1850467	-	NZ_LT556085.1	Citrobacter amalonaticus
15	273406	273576	+	NZ_CP020388.1	Pluralibacter gergoviae
16	5013160	5013321	-	NC_013716.1	Citrobacter rodentium ICC168
17	593901	594062	-	NZ_CP050508.1	Raoultella terrigena
18	4690351	4690518	+	NC_016845.1	Klebsiella pneumoniae subsp. pneumoniae HS11286
19	2151112	2151276	+	NZ_CP057657.1	Escherichia fergusonii
20	509996	510172	-	NZ_CP012264.1	Cronobacter condimenti 1330
21	2287058	2287222	-	NZ_CP042941.1	Atlantibacter hermannii
22	1137588	1137755	-	NZ_CP051548.1	Phytobacter diazotrophicus
23	5307657	5307824	-	NZ_CP011602.1	Phytobacter ursingii
24	585951	586118	-	NZ_CP065838.1	Klebsiella quasipneumoniae
25	507327	507503	-	NZ_CP012266.1	Cronobacter dublinensis subsp. dublinensis LMG 23823
26	638676	638834	-	NZ_CP045845.1	Kluyvera intermedia

Neighborhood Conservation Analysis

^* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
^* 'Small ORF' represents the entry/query analyzed.
^* Image generated using 'gggenes'(R-Package).

Neighborhood Representative Chosen(Species): NC_003197.2

Sr.No.	Domain	Co-occurrence Frequency	No. of species in which domain occurs with smORF	Median distance b/w smORF and domain bearing ORFs	Orientation relative to smORF	PFAM Information
1	PF07681.14	0.68	17	3326	same-strand	DoxX
2	PF13409.8	0.8	20	2286	same-strand	Glutathione S-transferase, N-terminal domain
3	PF13410.8	0.72	18	2337	same-strand	Glutathione S-transferase, C-terminal domain
4	PF05656.16	0.8	20	1776	same-strand	Protein of unknown function (DUF805)
5	PF03466.22	0.92	23	830.5	opposite-strand	LysR substrate binding domain
6	PF00126.29	0.96	24	830	opposite-strand	Bacterial regulatory helix-turn-helix protein, lysR family
7	PF02678.18	0.96	24	25	same-strand	Pirin
8	PF17954.3	0.96	24	25	same-strand	Quercetinase C-terminal cupin domain
9	PF03313.17	0.64	16	328.5	opposite-strand	Serine dehydratase alpha chain
10	PF03315.17	0.6	15	3122.5	opposite-strand	Serine dehydratase beta chain