Result : B2IVV0
| Protein Information |
| Information Type | Description |
|---|---|
| Protein name | UPF0367 protein Npun_R4552 |
| NCBI Accession ID | CP001037.1 |
| Organism | Nostoc punctiforme (strain ATCC 29133 / PCC 73102) |
| Left | 5657569 |
| Right | 5657841 |
| Strand | - |
| Nucleotide Sequence | ATGTTTACCATCGATTTAAGCATCAGAAACACTGCTTTCCCTATCTCGGTACAACGTAAGTCAGCAGAGGATGCTGAGGCTGTCTATCAGCTAATTTTGGCAGCAATCCGTTCTGGGAACCCTGACATTGTAGAACTCAAGTGCGAAGGCAAGACAGAGAAAAAAATTGCTGTCCGCGCTAGTGAAATTTCTGGGGTGCAGATTGTTCAGAAAGATGGTACAACCCCTGGTGGCGGCAGACCACCTGGCTTTTTCGCTGTAGCTGCTGAGTAA |
| Sequence | MFTIDLSIRNTAFPISVQRKSAEDAEAVYQLILAAIRSGNPDIVELKCEGKTEKKIAVRASEISGVQIVQKDGTTPGGGRPPGFFAVAAE |
| Source of smORF | Swiss-Prot |
| Function | The ORF matches to the profile of PRK13683. Profile Description: hypothetical protein; Provisional |
| Pubmed ID | |
| Domain | CDD:184240 |
| Functional Category | Others |
| Uniprot ID | B2IVV0 |
| ORF Length (Amino Acid) | 90 |
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| Conservation Analysis |
No. of Species: 14
| Sr.No. | Left Position | Right Position | Strand | NCBI Accession id | Species Name |
|---|---|---|---|---|---|
| 1 | 5773968 | 5774240 | - | NZ_CP031941.1 | Nostoc sphaeroides |
| 2 | 5253027 | 5253299 | - | NZ_CP054698.1 | Nostoc edaphicum CCNP1411 |
| 3 | 5657569 | 5657841 | - | NC_010628.1 | Nostoc punctiforme PCC 73102 |
| 4 | 5961739 | 5962011 | + | NZ_CP024785.1 | Nostoc flagelliforme CCNUN1 |
| 5 | 3834294 | 3834566 | - | NC_014248.1 | 'Nostoc azollae' 0708 |
| 6 | 3940648 | 3940920 | - | NC_019771.1 | Anabaena cylindrica PCC 7122 |
| 7 | 4383353 | 4383625 | + | NZ_CP047242.1 | Trichormus variabilis 0441 |
| 8 | 1649697 | 1649969 | - | NC_019751.1 | Calothrix sp. PCC 6303 |
| 9 | 2557013 | 2557300 | - | NZ_CP060822.1 | Cylindrospermopsis curvispora GIHE-G1 |
| 10 | 1871264 | 1871533 | + | NC_019695.1 | Chroococcidiopsis thermalis PCC 7203 |
| 11 | 3543111 | 3543380 | - | NC_019729.1 | Oscillatoria nigro-viridis PCC 7112 |
| 12 | 641625 | 641894 | + | NC_019689.1 | Pleurocapsa sp. PCC 7327 |
| 13 | 2048351 | 2048614 | - | NC_019753.1 | Crinalium epipsammum PCC 9333 |
| 14 | 1516125 | 1516388 | + | NC_019748.1 | Stanieria cyanosphaera PCC 7437 |
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| Neighborhood Conservation Analysis |
* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Representative Chosen(Species): NZ_CP031941.1
| Sr.No. | Domain | Co-occurrence Frequency | No. of species in which domain occurs with smORF | Median distance b/w smORF and domain bearing ORFs | Orientation relative to smORF | PFAM Information |
|---|---|---|---|---|---|---|
| 1 | PF05991.13 | 0.86 | 12 | 975.0 | same-strand | YacP-like NYN domain |
| 2 | PF00005.29 | 1.0 | 14 | 14.0 | same-strand | ABC transporter |
| 3 | PF00124.21 | 1.0 | 14 | 355.0 | opposite-strand | Photosynthetic reaction centre protein |
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