* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Representative Chosen(Species): NC_004337.2
Sr.No. |
Domain |
Co-occurrence Frequency |
No. of species in which domain occurs with smORF |
Median distance b/w smORF and domain bearing ORFs |
Orientation relative to smORF |
PFAM Information |
1
|
PF00860.22
|
0.67
|
2
|
124
|
opposite-strand
|
Permease family
|
2
|
PF00293.30
|
1.0
|
3
|
55.0
|
opposite-strand
|
NUDIX domain
|
3
|
PF00152.22
|
1.0
|
3
|
646.0
|
same-strand
|
tRNA synthetases class II (D, K and N)
|
4
|
PF01336.27
|
1.0
|
3
|
646.0
|
same-strand
|
OB-fold nucleic acid binding domain
|
5
|
PF00472.22
|
1.0
|
3
|
2173.0
|
same-strand
|
RF-1 domain
|
6
|
PF02272.21
|
1.0
|
3
|
3362.0
|
same-strand
|
DHHA1 domain
|
7
|
PF01368.22
|
1.0
|
3
|
3362.0
|
same-strand
|
DHH family
|
8
|
PF17768.3
|
1.0
|
3
|
3362.0
|
same-strand
|
RecJ OB domain
|
9
|
PF13098.8
|
1.0
|
3
|
5101.0
|
same-strand
|
Thioredoxin-like domain
|
10
|
PF10411.11
|
1.0
|
3
|
5101.0
|
same-strand
|
Disulfide bond isomerase protein N-terminus
|
11
|
PF00665.28
|
0.67
|
2
|
1825.0
|
same-strand
|
Integrase core domain
|
12
|
PF13683.8
|
0.67
|
2
|
1825.0
|
same-strand
|
Integrase core domain
|
13
|
PF01527.22
|
0.67
|
2
|
1494.5
|
same-strand
|
Transposase
|
++ More..