* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Representative Chosen(Species): NC_000913.3
Sr.No. |
Domain |
Co-occurrence Frequency |
No. of species in which domain occurs with smORF |
Median distance b/w smORF and domain bearing ORFs |
Orientation relative to smORF |
PFAM Information |
1
|
PF04293.15
|
1.0
|
2
|
3924.0
|
opposite-strand
|
SpoVR like protein
|
2
|
PF01266.26
|
1.0
|
2
|
2296.0
|
same-strand
|
FAD dependent oxidoreductase
|
3
|
PF01168.22
|
1.0
|
2
|
1216.0
|
same-strand
|
Alanine racemase, N-terminal domain
|
4
|
PF00842.23
|
1.0
|
2
|
1216.0
|
same-strand
|
Alanine racemase, C-terminal domain
|
5
|
PF00999.23
|
1.0
|
2
|
-128.0
|
opposite-strand
|
Sodium/hydrogen exchanger family
|
6
|
PF02080.23
|
1.0
|
2
|
-128.0
|
opposite-strand
|
TrkA-C domain
|
7
|
PF03471.19
|
1.0
|
2
|
-128.0
|
opposite-strand
|
Transporter associated domain
|
8
|
PF17676.3
|
1.0
|
2
|
1703.0
|
opposite-strand
|
LD-carboxypeptidase C-terminal domain
|
9
|
PF02016.17
|
1.0
|
2
|
1703.0
|
opposite-strand
|
LD-carboxypeptidase N-terminal domain
|
10
|
PF01464.22
|
1.0
|
2
|
2693.5
|
same-strand
|
Transglycosylase SLT domain
|
11
|
PF07317.14
|
1.0
|
2
|
3330.5
|
opposite-strand
|
Flagellar regulator YcgR
|
12
|
PF07238.16
|
1.0
|
2
|
3330.5
|
opposite-strand
|
PilZ domain
|
13
|
PF04226.15
|
1.0
|
2
|
4265.5
|
same-strand
|
Transglycosylase associated protein
|
++ More..