Result : EXP01054
| Protein Information |
| Information Type | Description |
|---|---|
| Protein name | EXP01054 |
| NCBI Accession ID | NC_016856.1 |
| Organism | Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S |
| Left | 3290809 |
| Right | 3290964 |
| Strand | + |
| Nucleotide Sequence | GTGGTGGAGTATTACACTCAAAACGGCATTACCGACTGGCAGACCGTGTGGCTCATCTTCGCAGGCTACTCGCTGGTGCTGGCCTTCGCGTTCGTAGCCTTGTTCAAATACAAACACGTTCGCGTTCCGGCAAGTTCGCAACCCGTTGCACATTAA |
| Sequence | VVEYYTQNGITDWQTVWLIFAGYSLVLAFAFVALFKYKHVRVPASSQPVAH |
| Source of smORF | Protein-level |
| Function | |
| Pubmed ID | 28122954 |
| Domain | |
| Functional Category | Function not yet assigned |
| Uniprot ID | |
| ORF Length (Amino Acid) | 51 |
++ More..
| Conservation Analysis |
No. of Species: 56
| Sr.No. | Left Position | Right Position | Strand | NCBI Accession id | Species Name |
|---|---|---|---|---|---|
| 1 | 3272563 | 3272718 | + | NC_003197.2 | Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 |
| 2 | 1089879 | 1090034 | + | NZ_CP053416.1 | Salmonella bongori |
| 3 | 5275326 | 5275481 | - | NC_013716.1 | Citrobacter rodentium ICC168 |
| 4 | 4967418 | 4967573 | + | NZ_CP045205.1 | Citrobacter telavivensis |
| 5 | 4193994 | 4194149 | - | NZ_CP038469.1 | Citrobacter tructae |
| 6 | 4829212 | 4829364 | + | NZ_CP038469.1 | Citrobacter tructae |
| 7 | 1878446 | 1878613 | + | NZ_CP033744.1 | Citrobacter freundii |
| 8 | 3226701 | 3226868 | - | NZ_CP044098.1 | Citrobacter portucalensis |
| 9 | 4019908 | 4020063 | + | NC_009792.1 | Citrobacter koseri ATCC BAA-895 |
| 10 | 2156788 | 2156943 | - | NZ_LT556085.1 | Citrobacter amalonaticus |
| 11 | 3590368 | 3590523 | + | NZ_LR134340.1 | Escherichia marmotae |
| 12 | 3848545 | 3848691 | + | NC_002695.2 | Escherichia coli O157:H7 str. Sakai |
| 13 | 3106824 | 3106970 | + | NC_000913.3 | Escherichia coli str. K-12 substr. MG1655 |
| 14 | 3048922 | 3049068 | + | NC_004337.2 | Shigella flexneri 2a str. 301 |
| 15 | 1998776 | 1998931 | + | NZ_CP057657.1 | Escherichia fergusonii |
| 16 | 4296233 | 4296385 | + | NZ_CP057657.1 | Escherichia fergusonii |
| 17 | 2605516 | 2605671 | + | NZ_CP023529.1 | Lelliottia amnigena |
| 18 | 3047818 | 3047964 | + | NZ_AP014857.1 | Escherichia albertii |
| 19 | 818165 | 818320 | - | NZ_CP060111.1 | Klebsiella michiganensis |
| 20 | 725259 | 725414 | + | NZ_CP061527.1 | Shigella dysenteriae |
| 21 | 737889 | 738035 | - | NZ_CP041247.1 | Raoultella electrica |
| 22 | 4467757 | 4467912 | - | NZ_CP045769.1 | Enterobacter cancerogenus |
| 23 | 1653392 | 1653547 | + | NZ_AP019007.1 | Enterobacter oligotrophicus |
| 24 | 3774175 | 3774327 | + | NZ_AP023184.1 | Buttiauxella agrestis |
| 25 | 3003630 | 3003785 | - | NZ_AP023184.1 | Buttiauxella agrestis |
| 26 | 3903309 | 3903464 | + | NC_015968.1 | Enterobacter soli |
| 27 | 3901719 | 3901874 | + | NZ_CP027986.1 | Enterobacter sichuanensis |
| 28 | 4458524 | 4458679 | - | NZ_CP017279.1 | Enterobacter ludwigii |
| 29 | 789426 | 789584 | - | NZ_CP046672.1 | Raoultella ornithinolytica |
| 30 | 3859305 | 3859460 | + | NZ_AP022508.1 | Enterobacter bugandensis |
| 31 | 4000814 | 4000969 | + | NZ_CP009756.1 | Enterobacter cloacae |
| 32 | 822032 | 822178 | - | NZ_CP013990.1 | Leclercia adecarboxylata |
| 33 | 784247 | 784399 | - | NZ_CP050508.1 | Raoultella terrigena |
| 34 | 4259381 | 4259536 | + | NZ_CP043318.1 | Enterobacter chengduensis |
| 35 | 905586 | 905744 | + | NZ_CP026047.1 | Raoultella planticola |
| 36 | 757033 | 757185 | - | NZ_CP054254.1 | Klebsiella variicola |
| 37 | 899713 | 899865 | - | NZ_CP036175.1 | Klebsiella huaxiensis |
| 38 | 719673 | 719828 | - | NZ_CP054058.1 | Scandinavium goeteborgense |
| 39 | 4499186 | 4499350 | + | NC_016845.1 | Klebsiella pneumoniae subsp. pneumoniae HS11286 |
| 40 | 3929244 | 3929399 | + | NZ_CP017184.1 | Enterobacter roggenkampii |
| 41 | 3365364 | 3365519 | - | NZ_CP025034.2 | Enterobacter sp. SGAir0187 |
| 42 | 782757 | 782894 | - | NZ_CP045845.1 | Kluyvera intermedia |
| 43 | 4392227 | 4392379 | + | NZ_CP015113.1 | Kosakonia radicincitans |
| 44 | 798519 | 798671 | - | NZ_CP014007.2 | Kosakonia oryzae |
| 45 | 3880964 | 3881116 | - | NZ_CP045300.1 | Kosakonia arachidis |
| 46 | 3800237 | 3800392 | + | NZ_CP012871.1 | [Enterobacter] lignolyticus |
| 47 | 733095 | 733247 | - | NZ_CP065838.1 | Klebsiella quasipneumoniae |
| 48 | 734347 | 734499 | - | NZ_CP035129.1 | Kosakonia cowanii |
| 49 | 4086220 | 4086372 | + | NZ_CP063425.1 | Kosakonia pseudosacchari |
| 50 | 3914597 | 3914749 | - | NZ_CP016337.1 | Kosakonia sacchari |
| 51 | 759840 | 760004 | - | NZ_LR134475.1 | Klebsiella aerogenes |
| 52 | 2453984 | 2454139 | - | NZ_CP042941.1 | Atlantibacter hermannii |
| 53 | 3282262 | 3282423 | - | NC_012779.2 | Edwardsiella ictaluri 93-146 |
| 54 | 4980300 | 4980437 | - | NZ_CP045293.1 | Paenibacillus guangzhouensis |
| 55 | 514856 | 515005 | + | NZ_CP016043.1 | Edwardsiella hoshinae |
| 56 | 2226657 | 2226818 | + | NZ_CP023706.1 | Edwardsiella tarda |
| 57 | 2228331 | 2228483 | + | NZ_CP023706.1 | Edwardsiella tarda |
| 58 | 4237250 | 4237396 | - | NZ_CP048796.1 | Providencia vermicola |
| 59 | 3251796 | 3251921 | - | NZ_LR134386.1 | Chryseobacterium nakagawai |
| 60 | 4135410 | 4135535 | - | NZ_CP033932.1 | Chryseobacterium bernardetii |
| 61 | 837659 | 837784 | - | NZ_CP033926.1 | Chryseobacterium joostei |
++ More..
| Neighborhood Conservation Analysis |
* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Representative Chosen(Species): NC_003197.2
| Sr.No. | Domain | Co-occurrence Frequency | No. of species in which domain occurs with smORF | Median distance b/w smORF and domain bearing ORFs | Orientation relative to smORF | PFAM Information |
|---|---|---|---|---|---|---|
| 1 | PF04320.16 | 0.86 | 48 | 4718 | opposite-strand | YggL 50S ribosome-binding protein |
| 2 | PF02390.19 | 0.86 | 48 | 3989 | opposite-strand | Putative methyltransferase |
| 3 | PF14815.8 | 0.86 | 48 | 2782 | same-strand | NUDIX domain |
| 4 | PF00730.27 | 0.86 | 48 | 2782 | same-strand | HhH-GPD superfamily base excision DNA repair protein |
| 5 | PF00633.25 | 0.86 | 48 | 2784.5 | same-strand | Helix-hairpin-helix motif |
| 6 | PF10576.11 | 0.75 | 42 | 2779 | same-strand | Iron-sulfur binding domain of endonuclease III |
| 7 | PF04362.16 | 0.86 | 48 | 2485 | same-strand | Bacterial Fe(2+) trafficking |
| 8 | PF11873.10 | 0.86 | 48 | 1327 | same-strand | Membrane-bound lytic murein transglycosylase C, N-terminal domain |
| 9 | PF01464.22 | 0.86 | 48 | 1327 | same-strand | Transglycosylase SLT domain |
++ More..