* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Representative Chosen(Species): NC_000913.3
Sr.No. |
Domain |
Co-occurrence Frequency |
No. of species in which domain occurs with smORF |
Median distance b/w smORF and domain bearing ORFs |
Orientation relative to smORF |
PFAM Information |
1
|
PF03486.16
|
1.0
|
2
|
3029
|
same-strand
|
HI0933-like protein
|
2
|
PF01384.22
|
1.0
|
2
|
1298
|
opposite-strand
|
Phosphate transporter family
|
3
|
PF10625.11
|
1.0
|
2
|
892
|
same-strand
|
Universal stress protein B (UspB)
|
4
|
PF00582.28
|
1.0
|
2
|
67
|
opposite-strand
|
Universal stress protein family
|
5
|
PF00854.23
|
1.0
|
2
|
179
|
opposite-strand
|
POT family
|
6
|
PF07690.18
|
1.0
|
2
|
179
|
opposite-strand
|
Major Facilitator Superfamily
|
7
|
PF04445.15
|
1.0
|
2
|
1694
|
same-strand
|
Putative SAM-dependent methyltransferase
|
8
|
PF01432.22
|
1.0
|
2
|
2454
|
same-strand
|
Peptidase family M3
|
9
|
PF19310.1
|
1.0
|
2
|
2454
|
same-strand
|
Neurolysin/Thimet oligopeptidase, N-terminal domain
|
10
|
PF04378.15
|
1.0
|
2
|
4699
|
opposite-strand
|
Ribosomal RNA large subunit methyltransferase D, RlmJ
|
++ More..