* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Representative Chosen(Species): NZ_LR134340.1
Sr.No. |
Domain |
Co-occurrence Frequency |
No. of species in which domain occurs with smORF |
Median distance b/w smORF and domain bearing ORFs |
Orientation relative to smORF |
PFAM Information |
1
|
PF01370.23
|
1.0
|
4
|
3124.5
|
opposite-strand
|
NAD dependent epimerase/dehydratase family
|
2
|
PF16363.7
|
0.75
|
3
|
3120
|
opposite-strand
|
GDP-mannose 4,6 dehydratase
|
3
|
PF01073.21
|
1.0
|
4
|
3124.5
|
opposite-strand
|
3-beta hydroxysteroid dehydrogenase/isomerase family
|
4
|
PF01075.19
|
1.0
|
4
|
1117.0
|
opposite-strand
|
Glycosyltransferase family 9 (heptosyltransferase)
|
5
|
PF06176.13
|
1.0
|
4
|
2138.0
|
same-strand
|
Lipopolysaccharide core biosynthesis protein (WaaY)
|
6
|
PF01501.22
|
1.0
|
4
|
2911.0
|
same-strand
|
Glycosyl transferase family 8
|
7
|
PF08437.12
|
1.0
|
4
|
2911.0
|
same-strand
|
Glycosyl transferase family 8 C-terminal
|
8
|
PF04932.17
|
0.75
|
3
|
-95
|
opposite-strand
|
O-Antigen ligase
|
9
|
PF00155.23
|
0.75
|
3
|
4276
|
same-strand
|
Aminotransferase class I and II
|
++ More..