* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Representative Chosen(Species): NZ_CP061527.1
Sr.No. |
Domain |
Co-occurrence Frequency |
No. of species in which domain occurs with smORF |
Median distance b/w smORF and domain bearing ORFs |
Orientation relative to smORF |
PFAM Information |
1
|
PF04612.14
|
1.0
|
5
|
140
|
opposite-strand
|
Type II secretion system (T2SS), protein M
|
2
|
PF12693.9
|
1.0
|
5
|
-59
|
opposite-strand
|
GspL periplasmic domain
|
3
|
PF03934.15
|
0.8
|
4
|
978.0
|
opposite-strand
|
Type II secretion system (T2SS), protein K
|
4
|
PF14341.8
|
0.6
|
3
|
978
|
opposite-strand
|
PilX N-terminal
|
5
|
PF11612.10
|
0.8
|
4
|
1952.0
|
opposite-strand
|
Type II secretion system (T2SS), protein J
|
6
|
PF07963.14
|
0.8
|
4
|
2554
|
opposite-strand
|
Prokaryotic N-terminal methylation motif
|
7
|
PF02501.19
|
0.8
|
4
|
2554.0
|
opposite-strand
|
Type II secretion system (T2SS), protein I
|
8
|
PF12019.10
|
0.8
|
4
|
2922.0
|
opposite-strand
|
Type II transport protein GspH
|
9
|
PF08334.13
|
0.6
|
3
|
3489
|
opposite-strand
|
Type II secretion system (T2SS), protein G
|
++ More..