* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Representative Chosen(Species): NC_002695.2
Sr.No. |
Domain |
Co-occurrence Frequency |
No. of species in which domain occurs with smORF |
Median distance b/w smORF and domain bearing ORFs |
Orientation relative to smORF |
PFAM Information |
1
|
PF02614.16
|
0.67
|
2
|
2927
|
opposite-strand
|
Glucuronate isomerase
|
2
|
PF00392.23
|
1.0
|
3
|
240.0
|
same-strand
|
Bacterial regulatory proteins, gntR family
|
3
|
PF07729.14
|
1.0
|
3
|
240.0
|
same-strand
|
FCD domain
|
4
|
PF09335.13
|
1.0
|
3
|
22.0
|
same-strand
|
SNARE associated Golgi protein
|
5
|
PF13721.8
|
1.0
|
3
|
688.0
|
same-strand
|
SecD export protein N-terminal TM region
|
6
|
PF06476.14
|
1.0
|
3
|
1218.0
|
same-strand
|
Protein of unknown function (DUF1090)
|
7
|
PF19029.2
|
1.0
|
3
|
1624.0
|
same-strand
|
DUF883 C-terminal glycine zipper region
|
8
|
PF05957.15
|
1.0
|
3
|
1624.0
|
same-strand
|
DUF883 N-terminal domain
|
9
|
PF07332.13
|
1.0
|
3
|
1932.0
|
same-strand
|
Putative Actinobacterial Holin-X, holin superfamily III
|
++ More..