* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Representative Chosen(Species): NC_011916.1
Sr.No. |
Domain |
Co-occurrence Frequency |
No. of species in which domain occurs with smORF |
Median distance b/w smORF and domain bearing ORFs |
Orientation relative to smORF |
PFAM Information |
1
|
PF01551.24
|
0.8
|
4
|
5998.0
|
same-strand
|
Peptidase family M23
|
2
|
PF04519.15
|
0.8
|
4
|
5536.5
|
same-strand
|
Polymer-forming cytoskeletal
|
3
|
PF03462.20
|
0.8
|
4
|
4242.0
|
opposite-strand
|
PCRF domain
|
4
|
PF00472.22
|
1.0
|
5
|
4311
|
opposite-strand
|
RF-1 domain
|
5
|
PF00912.24
|
1.0
|
5
|
1721
|
opposite-strand
|
Transglycosylase
|
6
|
PF00905.24
|
1.0
|
5
|
1721
|
opposite-strand
|
Penicillin binding protein transpeptidase domain
|
7
|
PF17092.7
|
1.0
|
5
|
1721
|
opposite-strand
|
Penicillin-binding protein OB-like domain
|
8
|
PF01520.20
|
1.0
|
5
|
404
|
opposite-strand
|
N-acetylmuramoyl-L-alanine amidase
|
9
|
PF10150.11
|
1.0
|
5
|
-76
|
same-strand
|
Ribonuclease E/G family
|
10
|
PF01435.20
|
1.0
|
5
|
2769
|
same-strand
|
Peptidase family M48
|
11
|
PF13428.8
|
0.8
|
4
|
2769.0
|
same-strand
|
Tetratricopeptide repeat
|
12
|
PF13432.8
|
1.0
|
5
|
2769
|
same-strand
|
Tetratricopeptide repeat
|
13
|
PF01323.22
|
1.0
|
5
|
4218
|
same-strand
|
DSBA-like thioredoxin domain
|
14
|
PF13462.8
|
1.0
|
5
|
4218
|
same-strand
|
Thioredoxin
|
15
|
PF18312.3
|
1.0
|
5
|
4218
|
same-strand
|
Copper resistance protein ScsC N-terminal domain
|
16
|
PF05690.16
|
1.0
|
5
|
4998
|
opposite-strand
|
Thiazole biosynthesis protein ThiG
|
17
|
PF02597.22
|
0.8
|
4
|
5837.5
|
opposite-strand
|
ThiS family
|
++ More..