* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Representative Chosen(Species): NC_000913.3
Sr.No. |
Domain |
Co-occurrence Frequency |
No. of species in which domain occurs with smORF |
Median distance b/w smORF and domain bearing ORFs |
Orientation relative to smORF |
PFAM Information |
1
|
PF02664.17
|
1.0
|
4
|
3380.5
|
same-strand
|
S-Ribosylhomocysteinase (LuxS)
|
2
|
PF04262.16
|
1.0
|
4
|
1636.5
|
same-strand
|
Glutamate-cysteine ligase
|
3
|
PF09335.13
|
1.0
|
4
|
1128.0
|
same-strand
|
SNARE associated Golgi protein
|
4
|
PF13419.8
|
1.0
|
4
|
563.5
|
same-strand
|
Haloacid dehalogenase-like hydrolase
|
5
|
PF00702.28
|
1.0
|
4
|
563.5
|
same-strand
|
haloacid dehalogenase-like hydrolase
|
6
|
PF02599.18
|
1.0
|
4
|
639.0
|
same-strand
|
Global regulator protein family
|
7
|
PF01411.21
|
1.0
|
4
|
1069.0
|
same-strand
|
tRNA synthetases class II (A)
|
8
|
PF02272.21
|
1.0
|
4
|
1069.0
|
same-strand
|
DHHA1 domain
|
9
|
PF07973.16
|
1.0
|
4
|
1069.0
|
same-strand
|
Threonyl and Alanyl tRNA synthetase second additional domain
|
10
|
PF02631.18
|
1.0
|
4
|
3881.5
|
same-strand
|
RecX family
|
11
|
PF00154.23
|
1.0
|
4
|
4486.0
|
same-strand
|
recA bacterial DNA recombination protein
|
12
|
PF08423.13
|
1.0
|
4
|
4486.0
|
same-strand
|
Rad51
|
13
|
PF02464.19
|
1.0
|
4
|
5647.5
|
same-strand
|
Competence-damaged protein
|
++ More..