* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Representative Chosen(Species): NC_002695.2
Sr.No. |
Domain |
Co-occurrence Frequency |
No. of species in which domain occurs with smORF |
Median distance b/w smORF and domain bearing ORFs |
Orientation relative to smORF |
PFAM Information |
1
|
PF03471.19
|
1.0
|
2
|
5620
|
same-strand
|
Transporter associated domain
|
2
|
PF00571.30
|
1.0
|
2
|
5620
|
same-strand
|
CBS domain
|
3
|
PF02130.19
|
1.0
|
2
|
5063
|
same-strand
|
Endoribonuclease YbeY
|
4
|
PF02562.18
|
1.0
|
2
|
3987
|
same-strand
|
PhoH-like protein
|
5
|
PF13245.8
|
1.0
|
2
|
3987
|
same-strand
|
AAA domain
|
6
|
PF00919.22
|
1.0
|
2
|
2449
|
same-strand
|
Uncharacterized protein family UPF0004
|
7
|
PF04055.23
|
1.0
|
2
|
2449
|
same-strand
|
Radical SAM superfamily
|
8
|
PF01938.22
|
1.0
|
2
|
2449
|
same-strand
|
TRAM domain
|
9
|
PF01494.21
|
1.0
|
2
|
1128
|
opposite-strand
|
FAD binding domain
|
10
|
PF13537.8
|
1.0
|
2
|
57
|
same-strand
|
Glutamine amidotransferase domain
|
11
|
PF13522.8
|
1.0
|
2
|
57
|
same-strand
|
Glutamine amidotransferase domain
|
12
|
PF13242.8
|
1.0
|
2
|
2001
|
same-strand
|
HAD-hyrolase-like
|
13
|
PF00480.22
|
1.0
|
2
|
2801
|
same-strand
|
ROK family
|
14
|
PF13412.8
|
1.0
|
2
|
2801
|
same-strand
|
Winged helix-turn-helix DNA-binding
|
15
|
PF01979.22
|
1.0
|
2
|
4030
|
same-strand
|
Amidohydrolase family
|
++ More..