Result : B2GDB4
| Protein Information |
| Information Type | Description |
|---|---|
| Protein name | 50S ribosomal protein L35 |
| NCBI Accession ID | AP008937.1 |
| Organism | Lactobacillus fermentum (strain NBRC 3956 / LMG 18251) |
| Left | 1490515 |
| Right | 1490712 |
| Strand | - |
| Nucleotide Sequence | ATGCCAAAGATGAAGACTAAGAGCGCTGCAGCCAAGCGTTTCAAGCGGACCGCTAAGGGTGGTTTCAAGAGTGGTAACTCATTTACTTCTCACCGTTTCCACGGTAAGACCAAGAAGCAACGCCGTCAATTGCGTGGTCTTTCCATGATGGACAAGTCTAACGTAAAGCGTTACAAGAAGATGATTCCTGCTAAGTAA |
| Sequence | MPKMKTKSAAAKRFKRTAKGGFKSGNSFTSHRFHGKTKKQRRQLRGLSMMDKSNVKRYKKMIPAK |
| Source of smORF | Swiss-Prot |
| Function | The ORF matches to the profile of cl00392. Profile Description: Ribosomal protein L35. This ribosomal protein is found in bacteria and organelles only. It is not closely related to any eukaryotic or archaeal ribosomal protein. [Protein synthesis, Ribosomal proteins: synthesis and modification] |
| Pubmed ID | 18487258 |
| Domain | CDD:412354 |
| Functional Category | Ribosomal_protein |
| Uniprot ID | B2GDB4 |
| ORF Length (Amino Acid) | 65 |
++ More..
| Conservation Analysis |
No. of Species: 284
| Sr.No. | Left Position | Right Position | Strand | NCBI Accession id | Species Name |
|---|---|---|---|---|---|
| 1 | 1142612 | 1142809 | - | NZ_CP044534.1 | Limosilactobacillus frumenti |
| 2 | 1213840 | 1214037 | - | NZ_CP045240.1 | Limosilactobacillus vaginalis |
| 3 | 1154008 | 1154208 | - | NZ_CP045530.1 | Limosilactobacillus pontis |
| 4 | 1325476 | 1325673 | - | NZ_CP045605.1 | Limosilactobacillus reuteri |
| 5 | 779678 | 779872 | + | NZ_LN898144.1 | Paucilactobacillus oligofermentans DSM 15707 = LMG 22743 |
| 6 | 919491 | 919688 | + | NZ_AP014680.1 | Paucilactobacillus hokkaidonensis JCM 18461 |
| 7 | 2176617 | 2176814 | - | NZ_CP029971.1 | Lentilactobacillus kefiri |
| 8 | 1821708 | 1821911 | + | NZ_CP012294.1 | Pediococcus damnosus |
| 9 | 663992 | 664195 | + | NZ_CP019981.1 | Pediococcus inopinatus |
| 10 | 2292349 | 2292546 | + | NZ_CP018796.1 | Lentilactobacillus parabuchneri |
| 11 | 817275 | 817475 | + | NZ_CP053421.1 | Pediococcus acidilactici |
| 12 | 742151 | 742348 | + | NC_008525.1 | Pediococcus pentosaceus ATCC 25745 |
| 13 | 1126179 | 1126382 | - | NC_016605.1 | Pediococcus claussenii ATCC BAA-344 |
| 14 | 1246041 | 1246238 | - | NZ_CP014324.1 | Oenococcus oeni |
| 15 | 116781 | 116978 | - | NZ_CP029684.2 | Oenococcus sicerae |
| 16 | 1763934 | 1764128 | + | NZ_CP018906.1 | Lentilactobacillus curieae |
| 17 | 1817507 | 1817701 | - | NZ_CP047121.1 | Lentilactobacillus hilgardii |
| 18 | 2196705 | 2196899 | - | NZ_CP059603.1 | Levilactobacillus suantsaii |
| 19 | 1536915 | 1537112 | + | NZ_CP042374.1 | Leuconostoc carnosum |
| 20 | 1124976 | 1125173 | - | NZ_CP042410.1 | Leuconostoc citreum |
| 21 | 1280567 | 1280764 | - | NC_018631.1 | Leuconostoc gelidum JB7 |
| 22 | 269648 | 269845 | + | NZ_CP028251.1 | Leuconostoc mesenteroides |
| 23 | 394222 | 394419 | - | NC_014136.1 | Leuconostoc kimchii IMSNU 11154 |
| 24 | 1386043 | 1386240 | - | NZ_CP015247.1 | Leuconostoc suionicum |
| 25 | 1483770 | 1483967 | - | NZ_CP065993.1 | Leuconostoc pseudomesenteroides |
| 26 | 1687171 | 1687365 | - | NZ_CP027563.1 | Weissella confusa |
| 27 | 1014824 | 1015018 | + | NZ_LS483405.1 | Levilactobacillus brevis |
| 28 | 2279472 | 2279669 | + | NZ_CP037940.1 | Weissella cryptocerci |
| 29 | 563657 | 563851 | + | NZ_CP045562.1 | Fructilactobacillus fructivorans |
| 30 | 13158 | 13352 | - | NZ_CP012033.1 | Levilactobacillus koreensis |
| 31 | 38669 | 38866 | - | NZ_CP042371.1 | Secundilactobacillus malefermentans |
| 32 | 1283145 | 1283342 | - | NZ_CP017326.1 | Weissella soli |
| 33 | 1191381 | 1191575 | - | NZ_CP023501.1 | Weissella paramesenteroides |
| 34 | 1198753 | 1198950 | + | NZ_CP040586.1 | Furfurilactobacillus rossiae |
| 35 | 994509 | 994703 | + | NZ_CP030105.1 | Lactiplantibacillus plantarum |
| 36 | 1596835 | 1597029 | + | NZ_CP032757.1 | Lactiplantibacillus pentosus |
| 37 | 542356 | 542550 | + | NZ_CP014332.1 | Weissella jogaejeotgali |
| 38 | 1315036 | 1315230 | - | NZ_CP061835.1 | Weissella viridescens |
| 39 | 2978930 | 2979127 | - | NZ_CP014912.1 | Secundilactobacillus paracollinoides |
| 40 | 793992 | 794180 | - | NZ_CP032626.1 | Apilactobacillus bombintestini |
| 41 | 1265078 | 1265278 | - | NZ_CP015444.1 | Lactobacillus helveticus |
| 42 | 544465 | 544665 | + | NZ_CP011403.1 | Ligilactobacillus salivarius str. Ren |
| 43 | 1562665 | 1562865 | - | NZ_CP018180.1 | Liquorilactobacillus nagelii |
| 44 | 614304 | 614498 | + | NZ_CP045563.1 | Fructilactobacillus sanfranciscensis |
| 45 | 673310 | 673510 | + | NZ_CP059829.1 | Lactobacillus ultunensis |
| 46 | 1528728 | 1528928 | - | NC_021181.2 | Lactobacillus acidophilus La-14 |
| 47 | 582726 | 582926 | + | NZ_CP061341.1 | Lactobacillus kefiranofaciens |
| 48 | 444745 | 444945 | + | NZ_CP031835.1 | Lactobacillus amylolyticus |
| 49 | 552003 | 552203 | + | NZ_CP044496.1 | Lactobacillus acetotolerans |
| 50 | 783906 | 784106 | + | NZ_CP047141.1 | Ligilactobacillus animalis |
| 51 | 1287943 | 1288143 | - | NZ_AP019750.1 | Lactobacillus delbrueckii subsp. delbrueckii |
| 52 | 1147181 | 1147375 | - | NZ_CP014872.1 | Fructilactobacillus lindneri |
| 53 | 1206260 | 1206460 | - | NZ_CP029544.1 | Lactobacillus helsingborgensis |
| 54 | 1292790 | 1292990 | - | NZ_CP029477.1 | Lactobacillus kullabergensis |
| 55 | 1225634 | 1225831 | - | NZ_CP024610.1 | Lactobacillus terrae |
| 56 | 1452027 | 1452227 | - | NZ_CP059276.1 | Lactobacillus taiwanensis |
| 57 | 1402559 | 1402759 | - | NC_008530.1 | Lactobacillus gasseri ATCC 33323 = JCM 1131 |
| 58 | 1445243 | 1445443 | - | NZ_AP018549.1 | Lactobacillus paragasseri |
| 59 | 1648300 | 1648500 | - | NC_014334.2 | Lacticaseibacillus paracasei |
| 60 | 1628416 | 1628616 | - | NZ_AP012544.1 | Lacticaseibacillus casei DSM 20011 = JCM 1134 = ATCC 393 |
| 61 | 1316056 | 1316256 | - | NZ_CP018809.1 | Lactobacillus jensenii |
| 62 | 1247641 | 1247835 | - | NZ_CP034726.1 | Acetilactobacillus jinshanensis |
| 63 | 1689802 | 1689999 | + | NZ_CP019323.1 | Companilactobacillus allii |
| 64 | 716446 | 716643 | - | NZ_CP012034.1 | Companilactobacillus ginsenosidimutans |
| 65 | 1630270 | 1630470 | - | NZ_LS991421.1 | Lacticaseibacillus zeae |
| 66 | 965901 | 966101 | - | NZ_CP026116.1 | Latilactobacillus curvatus JCM 1096 = DSM 20019 |
| 67 | 233697 | 233897 | - | NZ_CP046037.1 | Latilactobacillus sakei |
| 68 | 595936 | 596136 | + | NZ_CP045007.1 | Latilactobacillus graminis |
| 69 | 803734 | 803931 | + | NZ_CP017996.1 | Companilactobacillus crustorum |
| 70 | 1053810 | 1054010 | - | NZ_CP029476.1 | Lactobacillus apis |
| 71 | 551914 | 552114 | + | NZ_CP041364.1 | Schleiferilactobacillus harbinensis |
| 72 | 1758947 | 1759147 | + | NZ_CP049740.1 | Jeotgalibaca arthritidis |
| 73 | 1342609 | 1342809 | - | NZ_CP044499.1 | Lapidilactobacillus dextrinicus |
| 74 | 1588036 | 1588233 | - | NZ_CP012559.1 | Companilactobacillus heilongjiangensis |
| 75 | 1047425 | 1047622 | + | NZ_CP017702.1 | Companilactobacillus farciminis KCTC 3681 = DSM 20184 |
| 76 | 1762715 | 1762915 | - | NZ_CP070872.1 | Lactococcus taiwanensis |
| 77 | 830255 | 830455 | - | NZ_CP014835.1 | Streptococcus halotolerans |
| 78 | 612959 | 613159 | + | NZ_CP025536.1 | Streptococcus pluranimalium |
| 79 | 1425236 | 1425433 | - | NZ_CP049366.1 | Companilactobacillus pabuli |
| 80 | 949812 | 950009 | + | NZ_CP040736.1 | Companilactobacillus futsaii |
| 81 | 1546688 | 1546888 | - | NZ_CP032627.1 | Lactococcus allomyrinae |
| 82 | 1090568 | 1090768 | - | NC_017581.1 | Streptococcus thermophilus JIM 8232 |
| 83 | 196642 | 196842 | - | NZ_CP018888.1 | Amylolactobacillus amylophilus DSM 20533 = JCM 1125 |
| 84 | 580830 | 581030 | - | NZ_CP049889.1 | Jeotgalibaca porci |
| 85 | 271608 | 271808 | + | NZ_LS483306.1 | Enterococcus cecorum |
| 86 | 1123502 | 1123702 | - | NZ_LR594050.1 | Streptococcus porcinus |
| 87 | 2055808 | 2056008 | + | NZ_LR134341.1 | Streptococcus pseudoporcinus |
| 88 | 1038354 | 1038554 | - | NZ_LR134275.1 | Streptococcus vestibularis |
| 89 | 228302 | 228502 | + | NC_020207.1 | Enterococcus faecium ATCC 8459 = NRRL B-2354 |
| 90 | 257041 | 257241 | + | NZ_CP065211.1 | Enterococcus lactis |
| 91 | 402309 | 402509 | - | NZ_CP023011.2 | Enterococcus hirae |
| 92 | 1983756 | 1983956 | - | NC_022369.1 | Lactococcus lactis subsp. cremoris KW2 |
| 93 | 2264392 | 2264592 | + | NZ_CP034465.1 | Jeotgalibaca ciconiae |
| 94 | 1378138 | 1378338 | - | NZ_CP029491.1 | Streptococcus sobrinus |
| 95 | 956138 | 956338 | - | NZ_CP013237.1 | Streptococcus mutans |
| 96 | 1330079 | 1330279 | - | NZ_LR134512.1 | Streptococcus agalactiae |
| 97 | 639377 | 639577 | + | NZ_CP032621.1 | Streptococcus gwangjuense |
| 98 | 1378986 | 1379186 | - | NC_015875.1 | Streptococcus pseudopneumoniae IS7493 |
| 99 | 715101 | 715301 | + | NZ_CP034543.1 | Streptococcus periodonticum |
| 100 | 1075390 | 1075590 | - | NZ_LS483403.1 | Streptococcus lutetiensis |
| 101 | 1316182 | 1316382 | - | NZ_CP039457.1 | Streptococcus pasteurianus |
| 102 | 2220081 | 2220281 | - | NZ_CP054015.1 | Streptococcus gallolyticus |
| 103 | 1196589 | 1196789 | - | NZ_LS483343.1 | Streptococcus ferus |
| 104 | 1568639 | 1568839 | + | NZ_CP016953.1 | Streptococcus himalayensis |
| 105 | 739924 | 740124 | + | NZ_LS483383.1 | Streptococcus cristatus ATCC 51100 |
| 106 | 710473 | 710673 | + | NZ_LR134336.1 | Streptococcus oralis ATCC 35037 |
| 107 | 1400243 | 1400443 | + | NZ_CP032620.1 | Streptococcus koreensis |
| 108 | 1489032 | 1489232 | + | NZ_CP043405.1 | Streptococcus ratti |
| 109 | 1440749 | 1440949 | - | NZ_AP014612.1 | Streptococcus troglodytae |
| 110 | 1062679 | 1062879 | + | NZ_LR594049.1 | Streptococcus gordonii |
| 111 | 761629 | 761829 | + | NZ_CP012805.1 | Streptococcus anginosus |
| 112 | 1133790 | 1133990 | - | NZ_LS483436.1 | Streptococcus intermedius |
| 113 | 359407 | 359607 | + | NZ_CP031513.1 | Bombilactobacillus bombi |
| 114 | 1114864 | 1115061 | - | NZ_CP065061.1 | Streptococcus equi subsp. zooepidemicus |
| 115 | 1605077 | 1605277 | + | NZ_CP049887.1 | Vagococcus hydrophili |
| 116 | 1763017 | 1763217 | - | NZ_CP021874.1 | Enterococcus wangshanyuanii |
| 117 | 361506 | 361706 | + | NZ_CP019728.1 | Jeotgalibaca dankookensis |
| 118 | 613881 | 614078 | + | NZ_CP010450.1 | Streptococcus pyogenes |
| 119 | 1838424 | 1838621 | - | NZ_LR134293.1 | Streptococcus canis |
| 120 | 826415 | 826612 | + | NZ_LR594046.1 | Streptococcus dysgalactiae |
| 121 | 1507979 | 1508179 | - | NZ_CP031733.1 | Streptococcus chenjunshii |
| 122 | 1109905 | 1110105 | + | NZ_CP022680.1 | Streptococcus respiraculi |
| 123 | 1640938 | 1641138 | + | NZ_CP015196.1 | Streptococcus marmotae |
| 124 | 3318783 | 3318983 | + | NZ_CP018061.1 | Enterococcus mundtii |
| 125 | 389866 | 390069 | + | NZ_CP039712.1 | Vagococcus zengguangii |
| 126 | 206649 | 206849 | + | NZ_CP023074.1 | Enterococcus thailandicus |
| 127 | 533277 | 533477 | + | NZ_CP017267.1 | Vagococcus teuberi |
| 128 | 241409 | 241612 | - | NZ_CP049886.1 | Vagococcus coleopterorum |
| 129 | 752229 | 752429 | + | NZ_CP014699.1 | Streptococcus pantholopis |
| 130 | 1366581 | 1366781 | - | NZ_CP017194.1 | Lactococcus carnosus |
| 131 | 286757 | 286957 | - | NZ_CP023392.1 | Lactococcus raffinolactis |
| 132 | 1439121 | 1439321 | - | NZ_CP017195.1 | Lactococcus paracarnosus |
| 133 | 891543 | 891743 | - | NZ_LT906439.1 | Streptococcus merionis |
| 134 | 1272112 | 1272312 | - | NZ_AP018400.1 | Streptococcus ruminantium |
| 135 | 1211962 | 1212162 | - | NC_012924.1 | Streptococcus suis SC84 |
| 136 | 2190005 | 2190205 | - | NZ_AP022822.1 | Enterococcus saigonensis |
| 137 | 225821 | 226021 | + | NZ_CP012047.1 | Tetragenococcus halophilus |
| 138 | 2674069 | 2674269 | - | NZ_CP060720.1 | Vagococcus carniphilus |
| 139 | 296180 | 296377 | - | NZ_CP014159.1 | Aerococcus christensenii |
| 140 | 1612863 | 1613063 | - | NZ_CP035485.1 | Salicibibacter halophilus |
| 141 | 1461970 | 1462170 | - | NZ_CP031092.1 | Salicibibacter kimchii |
| 142 | 2924606 | 2924806 | - | NC_020995.1 | Enterococcus casseliflavus EC20 |
| 143 | 1138251 | 1138448 | + | NZ_CP053988.1 | Abiotrophia defectiva |
| 144 | 722230 | 722430 | - | NZ_CP027783.1 | Tetragenococcus osmophilus |
| 145 | 1369947 | 1370147 | + | NZ_CP014163.1 | Aerococcus urinaehominis |
| 146 | 881137 | 881337 | + | NZ_CP065637.1 | Lactococcus garvieae |
| 147 | 583560 | 583760 | + | NZ_CP014161.1 | Aerococcus urinae |
| 148 | 2521505 | 2521702 | - | NZ_AP021881.1 | Sulfuriferula nivalis |
| 149 | 1604958 | 1605155 | + | NZ_AP021884.1 | Sulfuriferula plumbiphila |
| 150 | 1787249 | 1787449 | - | NZ_CP017713.1 | Loigolactobacillus coryniformis subsp. coryniformis KCTC 3167 = DSM 20001 |
| 151 | 1495106 | 1495297 | + | NZ_CP043042.1 | Marinobacter fonticola |
| 152 | 2640180 | 2640371 | - | NZ_CP011494.1 | Marinobacter psychrophilus |
| 153 | 1180321 | 1180521 | + | NZ_CP018058.1 | Geobacillus thermocatenulatus |
| 154 | 1528025 | 1528225 | - | NZ_CP013988.1 | Aerococcus urinaeequi |
| 155 | 550432 | 550632 | + | NZ_CP014342.1 | Geobacillus subterraneus |
| 156 | 1209233 | 1209424 | + | NZ_CP031093.1 | Hydrocarboniclastica marina |
| 157 | 1747327 | 1747527 | - | NZ_LR134304.1 | Staphylococcus schweitzeri |
| 158 | 1682852 | 1683052 | - | NC_007795.1 | Staphylococcus aureus subsp. aureus NCTC 8325 |
| 159 | 1116689 | 1116889 | - | NZ_CP019573.1 | Abyssicoccus albus |
| 160 | 1422960 | 1423157 | + | NC_005085.1 | Chromobacterium violaceum ATCC 12472 |
| 161 | 2979774 | 2979971 | + | NZ_CP029495.1 | Chromobacterium phragmitis |
| 162 | 4226123 | 4226320 | + | NZ_CP017707.1 | Chromobacterium vaccinii |
| 163 | 1352742 | 1352942 | + | NZ_CP018776.1 | Staphylococcus condimenti |
| 164 | 1741538 | 1741738 | - | NZ_CP033460.1 | Staphylococcus debuckii |
| 165 | 657822 | 658022 | + | NZ_CP014164.1 | Aerococcus viridans |
| 166 | 3104023 | 3104217 | - | NC_002516.2 | Pseudomonas aeruginosa PAO1 |
| 167 | 387970 | 388170 | + | NZ_CP018199.1 | Staphylococcus succinus |
| 168 | 1209717 | 1209917 | + | NZ_CP064056.1 | Staphylococcus lloydii |
| 169 | 1240627 | 1240827 | + | NZ_CP008724.1 | Staphylococcus xylosus |
| 170 | 1550041 | 1550241 | - | NZ_CP013114.1 | Staphylococcus equorum |
| 171 | 1483435 | 1483635 | - | NC_014925.1 | Staphylococcus pseudintermedius HKU10-03 |
| 172 | 526897 | 527085 | - | NZ_CP029295.1 | Mycoplasma phocidae |
| 173 | 427790 | 427987 | + | NZ_CP039887.1 | Neisseria subflava |
| 174 | 577192 | 577380 | - | NZ_LS991949.1 | Mycoplasma alkalescens |
| 175 | 2737777 | 2737977 | - | NC_006510.1 | Geobacillus kaustophilus HTA426 |
| 176 | 1956196 | 1956396 | - | NZ_CP061470.1 | Geobacillus zalihae |
| 177 | 3185163 | 3185363 | + | NZ_CP061472.1 | Geobacillus thermoleovorans |
| 178 | 1286260 | 1286460 | - | NZ_CP045927.1 | Staphylococcus agnetis |
| 179 | 1269668 | 1269868 | + | NZ_CP008747.1 | Staphylococcus hyicus |
| 180 | 132781 | 132981 | - | NZ_CP020773.1 | Staphylococcus lutrae |
| 181 | 1163471 | 1163671 | + | NZ_LR134089.1 | Staphylococcus saprophyticus |
| 182 | 999065 | 999265 | - | NZ_CP007601.1 | Staphylococcus capitis subsp. capitis |
| 183 | 1195939 | 1196139 | + | NZ_CP035288.1 | Staphylococcus epidermidis |
| 184 | 1253171 | 1253371 | + | NZ_AP018587.1 | Staphylococcus caprae |
| 185 | 1672675 | 1672875 | - | NZ_LT906460.1 | Staphylococcus simiae |
| 186 | 3696342 | 3696542 | + | NZ_CP068053.1 | Peribacillus psychrosaccharolyticus |
| 187 | 2139743 | 2139943 | - | NZ_CP066042.1 | Staphylococcus saccharolyticus |
| 188 | 1935740 | 1935931 | - | NZ_CP017715.1 | Marinobacter salinus |
| 189 | 3081999 | 3082190 | - | NZ_CP020931.1 | Marinobacter salarius |
| 190 | 1103242 | 1103433 | + | NC_017506.1 | Marinobacter adhaerens HP15 |
| 191 | 1159679 | 1159879 | + | NZ_LR134242.1 | Staphylococcus warneri |
| 192 | 269302 | 269502 | - | NC_022737.1 | Staphylococcus pasteuri SP1 |
| 193 | 1284145 | 1284330 | - | NZ_CP012678.1 | Psychrobacter urativorans |
| 194 | 3808635 | 3808829 | - | NZ_CP043311.1 | Pseudomonas lalkuanensis |
| 195 | 202056 | 202244 | + | NZ_AP014631.1 | Mycoplasma canadense |
| 196 | 475919 | 476107 | + | NZ_AP014657.1 | Mycoplasmopsis arginini |
| 197 | 1116999 | 1117196 | + | NC_022357.1 | Sulfuricella denitrificans skB26 |
| 198 | 1201839 | 1202039 | - | NZ_CP068061.1 | Mammaliicoccus vitulinus |
| 199 | 959739 | 959939 | + | NZ_CP022046.2 | Mammaliicoccus sciuri |
| 200 | 435910 | 436107 | + | NZ_CP031253.1 | Neisseria lactamica |
| 201 | 421127 | 421315 | + | NZ_CP033058.2 | Mycoplasma phocicerebrale |
| 202 | 355248 | 355445 | + | NZ_LS483369.1 | Neisseria cinerea |
| 203 | 367329 | 367526 | + | NZ_CP039886.1 | Neisseria flavescens |
| 204 | 701233 | 701427 | - | NZ_CP012362.1 | Oblitimonas alkaliphila |
| 205 | 405384 | 405578 | + | NZ_CP059674.1 | Mycoplasma tullyi |
| 206 | 465728 | 465922 | + | NC_018406.1 | Mycoplasma gallisepticum VA94_7994-1-7P |
| 207 | 180827 | 181015 | + | NZ_LR215047.1 | Mycoplasma arthritidis |
| 208 | 825181 | 825378 | + | NZ_CP034118.1 | Staphylospora marina |
| 209 | 3129657 | 3129854 | + | NZ_LR778301.1 | Denitratisoma oestradiolicum |
| 210 | 341010 | 341198 | + | NZ_CP030103.1 | Mycoplasma cloacale |
| 211 | 314112 | 314309 | - | NZ_CP046027.1 | Neisseria brasiliensis |
| 212 | 4853156 | 4853347 | - | NZ_CP021425.1 | Oleiphilus messinensis |
| 213 | 1041748 | 1041948 | + | NZ_LT906462.1 | Mammaliicoccus stepanovicii |
| 214 | 2465337 | 2465522 | - | NC_007204.1 | Psychrobacter arcticus 273-4 |
| 215 | 908322 | 908516 | - | NZ_CP024963.1 | Entomoplasma luminosum |
| 216 | 1843235 | 1843429 | + | NZ_CP047698.1 | Pseudomonas knackmussii |
| 217 | 1758397 | 1758591 | + | NZ_CP011835.1 | Azotobacter chroococcum |
| 218 | 4566624 | 4566818 | + | NZ_CP045302.1 | Azotobacter salinestris |
| 219 | 1321677 | 1321874 | - | NZ_CP059569.1 | Kingella oralis |
| 220 | 2150941 | 2151135 | - | NC_010556.1 | Exiguobacterium sibiricum 255-15 |
| 221 | 715269 | 715457 | + | NZ_CP029258.1 | Mycoplasmopsis synoviae |
| 222 | 1668896 | 1669093 | + | NZ_CP022278.1 | Neisseria chenwenguii |
| 223 | 4634646 | 4634840 | - | NZ_CP014158.1 | Pseudomonas citronellolis |
| 224 | 304495 | 304689 | + | NZ_CP024962.1 | Entomoplasma freundtii |
| 225 | 1009813 | 1010001 | + | NZ_CP012502.1 | Bacillus beveridgei |
| 226 | 3348615 | 3348812 | + | NZ_CP017705.1 | Brevibacillus laterosporus DSM 25 |
| 227 | 3748812 | 3749006 | - | NZ_CP071706.1 | Pseudomonas donghuensis |
| 228 | 1185425 | 1185619 | - | NZ_CP031146.1 | Pseudomonas plecoglossicida |
| 229 | 3434173 | 3434367 | - | NZ_CP024159.1 | Pseudomonas mosselii |
| 230 | 2050082 | 2050276 | + | NC_008027.1 | Pseudomonas entomophila L48 |
| 231 | 2183309 | 2183503 | + | NC_021505.1 | Pseudomonas putida NBRC 14164 |
| 232 | 5083208 | 5083402 | - | NZ_CP048833.1 | Pseudomonas multiresinivorans |
| 233 | 1272716 | 1272910 | + | NZ_CP009365.1 | Pseudomonas soli |
| 234 | 705720 | 705908 | + | NZ_LR214938.2 | Mycoplasma salivarium |
| 235 | 3611920 | 3612114 | - | NZ_CP022562.1 | Pseudomonas monteilii |
| 236 | 1342704 | 1342904 | - | NZ_CP013911.1 | Staphylococcus haemolyticus |
| 237 | 2444070 | 2444267 | + | NZ_CP058952.1 | Chitinibacter fontanus |
| 238 | 140219 | 140416 | + | NC_018068.1 | Desulfosporosinus acidiphilus SJ4 |
| 239 | 874252 | 874440 | + | NZ_LR214951.1 | Mycoplasma neurolyticum |
| 240 | 2346851 | 2347036 | + | NZ_LR884459.1 | Psychrobacter arenosus |
| 241 | 4696386 | 4696577 | - | NC_007645.1 | Hahella chejuensis KCTC 2396 |
| 242 | 703632 | 703820 | + | NZ_CP030140.1 | Mycoplasma anseris |
| 243 | 2663909 | 2664103 | - | NZ_CP012676.1 | Pseudomonas versuta |
| 244 | 4039710 | 4039904 | - | NZ_CP049044.1 | Pseudomonas psychrophila |
| 245 | 306644 | 306838 | + | NC_002771.1 | Mycoplasmopsis pulmonis UAB CTIP |
| 246 | 293616 | 293804 | + | NZ_CP008748.1 | Mycoplasma hyosynoviae |
| 247 | 2036794 | 2036988 | + | NC_012560.1 | Azotobacter vinelandii DJ |
| 248 | 224802 | 224963 | - | NZ_CP024161.1 | Mycoplasma dispar |
| 249 | 656407 | 656595 | - | NZ_CP034044.1 | Mycoplasma struthionis |
| 250 | 3096893 | 3097078 | - | NZ_CP014945.1 | Psychrobacter alimentarius |
| 251 | 2829632 | 2829817 | - | NC_007969.1 | Psychrobacter cryohalolentis K5 |
| 252 | 731095 | 731283 | + | NZ_LR134365.1 | Cardiobacterium hominis |
| 253 | 1477769 | 1477966 | + | NC_017857.3 | Methylophaga nitratireducenticrescens |
| 254 | 791092 | 791289 | - | NC_021883.1 | Mannheimia haemolytica USMARC_2286 |
| 255 | 378480 | 378677 | + | NZ_CP007715.1 | Actinobacillus equuli subsp. equuli |
| 256 | 368780 | 368977 | + | NZ_CP009159.1 | Actinobacillus suis ATCC 33415 |
| 257 | 1492024 | 1492221 | - | NZ_CP009610.1 | Haemophilus influenzae |
| 258 | 1436945 | 1437142 | + | NZ_LS483458.1 | Haemophilus haemolyticus |
| 259 | 1578548 | 1578745 | - | NZ_LS483429.1 | Haemophilus aegyptius |
| 260 | 1610375 | 1610572 | + | NZ_LT906463.1 | Haemophilus pittmaniae |
| 261 | 1234001 | 1234198 | + | NZ_CP015425.1 | [Haemophilus] ducreyi |
| 262 | 1366941 | 1367138 | - | NZ_CP016604.1 | Otariodibacter oris |
| 263 | 1202708 | 1202905 | - | NZ_CP016605.1 | Bisgaardia hudsonensis |
| 264 | 774113 | 774310 | - | NZ_CP006944.1 | Mannheimia varigena USDA-ARS-USMARC-1312 |
| 265 | 1981910 | 1982107 | - | NZ_CP015029.1 | Frederiksenia canicola |
| 266 | 1820891 | 1821088 | + | NZ_CP046531.1 | Mannheimia ovis |
| 267 | 1888492 | 1888689 | + | NZ_CP055305.1 | Mannheimia pernigra |
| 268 | 1773058 | 1773255 | - | NZ_LR134167.1 | Avibacterium volantium |
| 269 | 679141 | 679338 | + | NZ_CP015031.1 | Basfia succiniciproducens |
| 270 | 1424416 | 1424613 | - | NZ_CP029206.1 | Actinobacillus porcitonsillarum |
| 271 | 1898176 | 1898373 | - | NC_011852.1 | Glaesserella parasuis SH0165 |
| 272 | 2110077 | 2110274 | - | NZ_CP028926.1 | Pasteurella multocida |
| 273 | 758241 | 758438 | + | NZ_LT906448.1 | Pasteurella dagmatis |
| 274 | 1038996 | 1039193 | + | NC_006300.1 | [Mannheimia] succiniciproducens MBEL55E |
| 275 | 250078 | 250275 | + | NZ_CP030753.1 | Actinobacillus pleuropneumoniae |
| 276 | 660395 | 660592 | + | NZ_CP006954.1 | Bibersteinia trehalosi USDA-ARS-USMARC-188 |
| 277 | 1958933 | 1959130 | + | NZ_CP061280.1 | Mannheimia bovis |
| 278 | 1125851 | 1126048 | + | NZ_CP018804.1 | Histophilus somni |
| 279 | 148693 | 148893 | + | NZ_CP030053.1 | Bradyrhizobium guangzhouense |
| 280 | 4512744 | 4512938 | - | NZ_CP048878.1 | Spartinivicinus ruber |
| 281 | 561810 | 562007 | - | NZ_CP040863.1 | Rodentibacter heylii |
| 282 | 4589428 | 4589622 | - | NZ_CP012643.1 | Rufibacter tibetensis |
| 283 | 3465258 | 3465458 | + | NC_010581.1 | Beijerinckia indica subsp. indica ATCC 9039 |
| 284 | 3032072 | 3032266 | + | NZ_CP018477.1 | Thermogutta terrifontis |
++ More..
| Neighborhood Conservation Analysis |
* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Representative Chosen(Species): NZ_CP044534.1
| Sr.No. | Domain | Co-occurrence Frequency | No. of species in which domain occurs with smORF | Median distance b/w smORF and domain bearing ORFs | Orientation relative to smORF | PFAM Information |
|---|---|---|---|---|---|---|
| 1 | PF00453.20 | 0.93 | 265 | 50 | same-strand | Ribosomal protein L20 |
| 2 | PF00707.24 | 0.96 | 273 | 34 | same-strand | Translation initiation factor IF-3, C-terminal domain |
| 3 | PF05198.18 | 0.77 | 218 | 31.0 | same-strand | Translation initiation factor IF-3, N-terminal domain |
++ More..