Result : A0QNJ5
| Protein Information |
| Information Type | Description |
|---|---|
| Protein name | ESAT-6-like protein EsxB |
| NCBI Accession ID | CP000480.1 |
| Organism | Mycolicibacterium smegmatis (strain ATCC 700084 / mc(2)155) (Mycobacterium smegmatis) |
| Left | 86997 |
| Right | 87299 |
| Strand | + |
| Nucleotide Sequence | ATGGCAGCAATGAATACAGATGCCGCCGTCCTCGCCAAGGAGGCGGCGAATTTCGAGCGCATCTCCGGCGAGCTCAAGGGCGTCATCGCGCAGGTTGAGTCCACGGGCTCCGCTCTGGCCGCTCAGATGGTCGGCCAGGCAGGCACCGCCGCGCAGGCCGCGCTGGCTCGGTTCCACGAGGCCGCCGCCAAGCAGGTTCAGGAGTTGAACGAGATCTCGGCCAACATCCACACCTCGGGCACGCAGTACACCTCGACCGACGAGGACCAGGCGGGCACGCTTGCGTCGTCGATGAACATCTGA |
| Sequence | MAAMNTDAAVLAKEAANFERISGELKGVIAQVESTGSALAAQMVGQAGTAAQAALARFHEAAAKQVQELNEISANIHTSGTQYTSTDEDQAGTLASSMNI |
| Source of smORF | Swiss-Prot |
| Function | An exported protein. Plays a role in DNA conjugation, in at least a donor strain (Pubmed:15314236). {ECO:0000269|Pubmed:15314236}. |
| Pubmed ID | 17295914 18955433 15314236 15687187 19854905 20085764 23150662 |
| Domain | CDD:413154 |
| Functional Category | Others |
| Uniprot ID | A0QNJ5 |
| ORF Length (Amino Acid) | 100 |
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| Conservation Analysis |
No. of Species: 45
| Sr.No. | Left Position | Right Position | Strand | NCBI Accession id | Species Name |
|---|---|---|---|---|---|
| 1 | 87481 | 87783 | + | NZ_LN831039.1 | Mycolicibacterium smegmatis |
| 2 | 1510825 | 1511127 | + | NZ_CP012150.1 | Mycobacterium goodii |
| 3 | 3587568 | 3587870 | - | NZ_AP022565.1 | Mycolicibacterium alvei |
| 4 | 56950 | 57252 | + | NZ_CP011269.1 | Mycolicibacterium fortuitum |
| 5 | 1359507 | 1359809 | + | NZ_AP022579.1 | Mycolicibacterium boenickei |
| 6 | 2348498 | 2348791 | - | NZ_AP022567.1 | Mycolicibacterium mageritense |
| 7 | 4438279 | 4438581 | - | NZ_LR026975.1 | Mycolicibacterium hassiacum DSM 44199 |
| 8 | 7455491 | 7455784 | - | NZ_CP020809.1 | Mycobacterium dioxanotrophicus |
| 9 | 411869 | 412168 | - | NZ_AP022560.1 | Mycolicibacterium moriokaense |
| 10 | 1372201 | 1372503 | + | NZ_AP022588.1 | Mycolicibacterium sediminis |
| 11 | 1279330 | 1279632 | - | NZ_CP043474.1 | Mycobacterium grossiae |
| 12 | 2281891 | 2282193 | - | NZ_AP022599.1 | Mycolicibacterium pulveris |
| 13 | 3481924 | 3482226 | - | NZ_AP022593.1 | Mycolicibacterium arabiense |
| 14 | 71048 | 71350 | + | NZ_LT906483.1 | Mycolicibacterium thermoresistibile |
| 15 | 3510717 | 3511019 | + | NZ_AP022573.1 | Mycobacterium saskatchewanense |
| 16 | 3955125 | 3955418 | + | NZ_AP022605.1 | Mycobacterium doricum |
| 17 | 4319486 | 4319779 | - | NZ_AP022586.1 | Mycolicibacterium litorale |
| 18 | 4824070 | 4824363 | - | NZ_AP022617.1 | Mycolicibacterium monacense |
| 19 | 5609899 | 5610201 | - | NZ_AP022610.1 | Mycolicibacterium madagascariense |
| 20 | 4441964 | 4442266 | + | NZ_AP022601.1 | Mycobacterium gallinarum |
| 21 | 5185034 | 5185336 | + | NZ_AP018164.1 | Mycobacterium shigaense |
| 22 | 4426394 | 4426696 | + | NZ_AP022581.1 | Mycobacterium lacus |
| 23 | 4634321 | 4634623 | - | NZ_AP022581.1 | Mycobacterium lacus |
| 24 | 4219579 | 4219890 | - | NZ_AP022608.1 | Mycolicibacterium gadium |
| 25 | 4172810 | 4173112 | + | NZ_AP022582.1 | Mycobacterium seoulense |
| 26 | 3978283 | 3978585 | + | NZ_AP022619.1 | Mycobacterium paraseoulense |
| 27 | 3375171 | 3375473 | + | NZ_AP022575.1 | Mycobacterium shinjukuense |
| 28 | 3805993 | 3806295 | + | NZ_AP022575.1 | Mycobacterium shinjukuense |
| 29 | 4352274 | 4352576 | + | NC_000962.3 | Mycobacterium tuberculosis H37Rv |
| 30 | 4422648 | 4422950 | + | NC_015848.1 | Mycobacterium canettii CIPT 140010059 |
| 31 | 3738470 | 3738781 | - | NZ_AP022576.1 | Mycobacterium florentinum |
| 32 | 3173234 | 3173536 | + | NC_022663.1 | Mycobacterium kansasii ATCC 12478 |
| 33 | 4072571 | 4072882 | - | NZ_AP022587.1 | Mycobacterium stomatepiae |
| 34 | 1085104 | 1085406 | - | NZ_AP022572.1 | Mycobacterium shottsii |
| 35 | 6008575 | 6008877 | + | NZ_AP018410.1 | Mycobacterium pseudoshottsii JCM 15466 |
| 36 | 1409747 | 1410049 | + | NZ_CP058277.1 | Mycobacterium marinum |
| 37 | 1689591 | 1689893 | + | NZ_CP058277.1 | Mycobacterium marinum |
| 38 | 1693239 | 1693541 | + | NZ_CP058277.1 | Mycobacterium marinum |
| 39 | 5549664 | 5549966 | + | NZ_LR130759.1 | Mycobacterium basiliense |
| 40 | 121618 | 121920 | + | NZ_LR130759.1 | Mycobacterium basiliense |
| 41 | 4342347 | 4342649 | - | NZ_AP022614.1 | Mycobacterium parmense |
| 42 | 3550272 | 3550577 | + | NZ_AP022577.1 | Mycolicibacterium aubagnense |
| 43 | 1380114 | 1380416 | - | NZ_AP022598.1 | Mycolicibacterium parafortuitum |
| 44 | 6685467 | 6685769 | + | NZ_CP025546.1 | Mycobacterium paragordonae |
| 45 | 69236 | 69541 | + | NZ_CP062008.1 | Mycolicibacterium mucogenicum DSM 44124 |
| 46 | 664474 | 664779 | + | NZ_AP022570.1 | Mycolicibacterium poriferae |
| 47 | 76572 | 76880 | + | NZ_CP011491.1 | Mycolicibacterium vaccae 95051 |
| 48 | 3692737 | 3693042 | - | NZ_AP022616.1 | Mycolicibacterium phocaicum |
| 49 | 70291 | 70599 | + | NZ_LR134356.1 | Mycolicibacterium aurum |
| 50 | 89848 | 90126 | + | NC_008726.1 | Mycolicibacterium vanbaalenii PYR-1 |
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| Neighborhood Conservation Analysis |
* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Representative Chosen(Species): NZ_LN831039.1
| Sr.No. | Domain | Co-occurrence Frequency | No. of species in which domain occurs with smORF | Median distance b/w smORF and domain bearing ORFs | Orientation relative to smORF | PFAM Information |
|---|---|---|---|---|---|---|
| 1 | PF05108.15 | 0.96 | 43 | 5866.0 | same-strand | Type VII secretion system ESX-1, transport TM domain B |
| 2 | PF01580.20 | 1.0 | 45 | 1945 | same-strand | FtsK/SpoIIIE family |
| 3 | PF00934.22 | 0.71 | 32 | 1452 | same-strand | PE family |
| 4 | PF00823.21 | 1.0 | 45 | 93 | same-strand | PPE family |
| 5 | PF06013.14 | 1.0 | 45 | 37.0 | same-strand | Proteins of 100 residues with WXG |
| 6 | PF01656.25 | 0.91 | 41 | 445 | same-strand | CobQ/CobB/MinD/ParA nucleotide binding domain |
| 7 | PF08817.12 | 1.0 | 45 | 1882 | same-strand | WXG100 protein secretion system (Wss), protein YukD |
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