Result : B2G5S8
| Protein Information |
| Information Type | Description |
|---|---|
| Protein name | 50S ribosomal protein L33 1 |
| NCBI Accession ID | AP007281.1 |
| Organism | Lactobacillus reuteri (strain JCM 1112) |
| Left | 354129 |
| Right | 354278 |
| Strand | + |
| Nucleotide Sequence | ATGTCCCAGAAAAAAGTAGCATTGGAATGTACAAAGTGCGGTGCGCGTAATTATACGATTACCGCTAACCCTCAACGACAAGAACGATTAGAATTACGTAAGTTCTGTAAACATTGCGGTGAATATACTATTCATCGTGAAAGCAGATAG |
| Sequence | MSQKKVALECTKCGARNYTITANPQRQERLELRKFCKHCGEYTIHRESR |
| Source of smORF | Swiss-Prot |
| Function | The ORF matches to the profile of cl00383. Profile Description: Ribosomal protein L33. This model describes bacterial ribosomal protein L33 and its chloroplast and mitochondrial equivalents. [Protein synthesis, Ribosomal proteins: synthesis and modification] |
| Pubmed ID | 18487258 |
| Domain | CDD:412348 |
| Functional Category | Ribosomal_protein |
| Uniprot ID | B2G5S8 |
| ORF Length (Amino Acid) | 49 |
++ More..
| Conservation Analysis |
No. of Species: 267
| Sr.No. | Left Position | Right Position | Strand | NCBI Accession id | Species Name |
|---|---|---|---|---|---|
| 1 | 353874 | 354023 | + | NZ_CP045605.1 | Limosilactobacillus reuteri |
| 2 | 371964 | 372113 | + | NZ_CP045530.1 | Limosilactobacillus pontis |
| 3 | 345899 | 346048 | + | NZ_CP045240.1 | Limosilactobacillus vaginalis |
| 4 | 371585 | 371734 | + | NZ_CP044534.1 | Limosilactobacillus frumenti |
| 5 | 1058607 | 1058756 | - | NZ_CP045562.1 | Fructilactobacillus fructivorans |
| 6 | 714157 | 714306 | + | NZ_CP032757.1 | Lactiplantibacillus pentosus |
| 7 | 209640 | 209789 | + | NZ_CP030105.1 | Lactiplantibacillus plantarum |
| 8 | 435394 | 435543 | + | NZ_CP045563.1 | Fructilactobacillus sanfranciscensis |
| 9 | 2010092 | 2010241 | - | NZ_CP047121.1 | Lentilactobacillus hilgardii |
| 10 | 2143761 | 2143910 | - | NZ_CP040586.1 | Furfurilactobacillus rossiae |
| 11 | 1586233 | 1586382 | + | NZ_CP018906.1 | Lentilactobacillus curieae |
| 12 | 2044883 | 2045032 | + | NZ_CP018796.1 | Lentilactobacillus parabuchneri |
| 13 | 1040008 | 1040157 | - | NZ_CP037940.1 | Weissella cryptocerci |
| 14 | 555202 | 555351 | + | NZ_CP012559.1 | Companilactobacillus heilongjiangensis |
| 15 | 540226 | 540375 | + | NZ_CP017996.1 | Companilactobacillus crustorum |
| 16 | 461164 | 461313 | + | NZ_CP018180.1 | Liquorilactobacillus nagelii |
| 17 | 1636103 | 1636252 | - | NZ_CP053421.1 | Pediococcus acidilactici |
| 18 | 1320836 | 1320985 | + | NZ_CP059603.1 | Levilactobacillus suantsaii |
| 19 | 1213252 | 1213401 | - | NZ_CP044499.1 | Lapidilactobacillus dextrinicus |
| 20 | 791881 | 792030 | - | NZ_CP012294.1 | Pediococcus damnosus |
| 21 | 1998615 | 1998764 | - | NZ_CP017702.1 | Companilactobacillus farciminis KCTC 3681 = DSM 20184 |
| 22 | 1621051 | 1621200 | - | NZ_CP049366.1 | Companilactobacillus pabuli |
| 23 | 2368235 | 2368384 | - | NZ_CP029971.1 | Lentilactobacillus kefiri |
| 24 | 1454360 | 1454515 | - | NZ_CP034726.1 | Acetilactobacillus jinshanensis |
| 25 | 1429798 | 1429947 | - | NZ_CP019981.1 | Pediococcus inopinatus |
| 26 | 471609 | 471758 | + | NC_016605.1 | Pediococcus claussenii ATCC BAA-344 |
| 27 | 954262 | 954411 | - | NZ_CP012034.1 | Companilactobacillus ginsenosidimutans |
| 28 | 1464358 | 1464507 | - | NC_008525.1 | Pediococcus pentosaceus ATCC 25745 |
| 29 | 400364 | 400513 | + | NZ_CP047141.1 | Ligilactobacillus animalis |
| 30 | 71465 | 71614 | - | NZ_CP019323.1 | Companilactobacillus allii |
| 31 | 1516028 | 1516177 | + | NZ_CP042371.1 | Secundilactobacillus malefermentans |
| 32 | 1925715 | 1925864 | - | NZ_CP040736.1 | Companilactobacillus futsaii |
| 33 | 16498 | 16647 | - | NZ_CP014872.1 | Fructilactobacillus lindneri |
| 34 | 1224755 | 1224907 | - | NZ_CP011403.1 | Ligilactobacillus salivarius str. Ren |
| 35 | 338263 | 338412 | - | NZ_CP018888.1 | Amylolactobacillus amylophilus DSM 20533 = JCM 1125 |
| 36 | 295988 | 296137 | + | NZ_CP045007.1 | Latilactobacillus graminis |
| 37 | 2166183 | 2166332 | + | NZ_CP014912.1 | Secundilactobacillus paracollinoides |
| 38 | 426296 | 426445 | + | NZ_CP044496.1 | Lactobacillus acetotolerans |
| 39 | 1464071 | 1464220 | - | NZ_LN898144.1 | Paucilactobacillus oligofermentans DSM 15707 = LMG 22743 |
| 40 | 384103 | 384252 | - | NZ_CP012033.1 | Levilactobacillus koreensis |
| 41 | 1442653 | 1442802 | - | NZ_AP019750.1 | Lactobacillus delbrueckii subsp. delbrueckii |
| 42 | 681082 | 681231 | + | NZ_LS483405.1 | Levilactobacillus brevis |
| 43 | 338425 | 338574 | + | NC_021181.2 | Lactobacillus acidophilus La-14 |
| 44 | 441092 | 441241 | + | NZ_CP059829.1 | Lactobacillus ultunensis |
| 45 | 362924 | 363073 | + | NZ_CP041364.1 | Schleiferilactobacillus harbinensis |
| 46 | 2209642 | 2209791 | - | NZ_AP012544.1 | Lacticaseibacillus casei DSM 20011 = JCM 1134 = ATCC 393 |
| 47 | 1395336 | 1395485 | - | NZ_CP024610.1 | Lactobacillus terrae |
| 48 | 1497470 | 1497619 | - | NZ_CP015444.1 | Lactobacillus helveticus |
| 49 | 2241383 | 2241532 | - | NZ_LS991421.1 | Lacticaseibacillus zeae |
| 50 | 422776 | 422925 | + | NZ_CP059276.1 | Lactobacillus taiwanensis |
| 51 | 378856 | 379005 | + | NC_008530.1 | Lactobacillus gasseri ATCC 33323 = JCM 1131 |
| 52 | 304404 | 304553 | + | NZ_CP031835.1 | Lactobacillus amylolyticus |
| 53 | 399221 | 399370 | + | NZ_CP061341.1 | Lactobacillus kefiranofaciens |
| 54 | 1275033 | 1275182 | - | NZ_CP026116.1 | Latilactobacillus curvatus JCM 1096 = DSM 20019 |
| 55 | 2231157 | 2231306 | - | NC_014334.2 | Lacticaseibacillus paracasei |
| 56 | 440699 | 440848 | + | NZ_CP018809.1 | Lactobacillus jensenii |
| 57 | 1331717 | 1331866 | - | NZ_CP029544.1 | Lactobacillus helsingborgensis |
| 58 | 339903 | 340052 | + | NZ_CP027563.1 | Weissella confusa |
| 59 | 1172090 | 1172239 | - | NZ_CP029476.1 | Lactobacillus apis |
| 60 | 1418127 | 1418276 | - | NZ_CP029477.1 | Lactobacillus kullabergensis |
| 61 | 74392 | 74541 | + | NZ_CP023501.1 | Weissella paramesenteroides |
| 62 | 202030 | 202179 | + | NZ_CP061835.1 | Weissella viridescens |
| 63 | 531193 | 531342 | - | NZ_CP046037.1 | Latilactobacillus sakei |
| 64 | 388154 | 388303 | + | NZ_AP018549.1 | Lactobacillus paragasseri |
| 65 | 1036215 | 1036364 | - | NZ_CP032626.1 | Apilactobacillus bombintestini |
| 66 | 1775777 | 1775926 | - | NZ_CP014332.1 | Weissella jogaejeotgali |
| 67 | 1907052 | 1907201 | - | NZ_CP065993.1 | Leuconostoc pseudomesenteroides |
| 68 | 1475452 | 1475601 | - | NZ_CP028251.1 | Leuconostoc mesenteroides |
| 69 | 213656 | 213805 | + | NZ_CP015247.1 | Leuconostoc suionicum |
| 70 | 1892802 | 1892954 | - | NC_012924.1 | Streptococcus suis SC84 |
| 71 | 1953838 | 1953990 | - | NZ_CP013988.1 | Aerococcus urinaeequi |
| 72 | 237804 | 237956 | + | NZ_CP014164.1 | Aerococcus viridans |
| 73 | 2322321 | 2322455 | + | NZ_CP009709.1 | Weizmannia coagulans DSM 1 = ATCC 7050 |
| 74 | 1855499 | 1855651 | - | NZ_AP018400.1 | Streptococcus ruminantium |
| 75 | 153203 | 153355 | + | NZ_CP039457.1 | Streptococcus pasteurianus |
| 76 | 946210 | 946362 | + | NZ_CP054015.1 | Streptococcus gallolyticus |
| 77 | 1342982 | 1343134 | + | NZ_LR134341.1 | Streptococcus pseudoporcinus |
| 78 | 876337 | 876489 | + | NZ_CP043405.1 | Streptococcus ratti |
| 79 | 128947 | 129096 | + | NZ_CP017326.1 | Weissella soli |
| 80 | 2319699 | 2319851 | + | NZ_LT906439.1 | Streptococcus merionis |
| 81 | 1365685 | 1365837 | - | NZ_CP014835.1 | Streptococcus halotolerans |
| 82 | 1956952 | 1957104 | - | NZ_CP029491.1 | Streptococcus sobrinus |
| 83 | 138881 | 139033 | + | NZ_LS483403.1 | Streptococcus lutetiensis |
| 84 | 133851 | 133997 | + | NZ_CP016543.2 | Planococcus donghaensis |
| 85 | 689324 | 689476 | + | NZ_CP032620.1 | Streptococcus koreensis |
| 86 | 173061 | 173213 | + | NZ_LR134336.1 | Streptococcus oralis ATCC 35037 |
| 87 | 1627467 | 1627619 | - | NZ_CP032621.1 | Streptococcus gwangjuense |
| 88 | 573583 | 573735 | - | NZ_CP015196.1 | Streptococcus marmotae |
| 89 | 1918463 | 1918615 | - | NZ_LR134512.1 | Streptococcus agalactiae |
| 90 | 110824 | 110952 | + | NZ_CP016539.2 | Planococcus plakortidis |
| 91 | 165176 | 165328 | + | NZ_CP031733.1 | Streptococcus chenjunshii |
| 92 | 948120 | 948272 | - | NZ_CP014163.1 | Aerococcus urinaehominis |
| 93 | 1809756 | 1809908 | - | NZ_CP017267.1 | Vagococcus teuberi |
| 94 | 219422 | 219574 | + | NZ_LR134275.1 | Streptococcus vestibularis |
| 95 | 865173 | 865322 | - | NZ_CP023392.1 | Lactococcus raffinolactis |
| 96 | 1843590 | 1843742 | - | NZ_LR594050.1 | Streptococcus porcinus |
| 97 | 2071570 | 2071722 | - | NZ_LR594049.1 | Streptococcus gordonii |
| 98 | 212488 | 212640 | + | NZ_CP025536.1 | Streptococcus pluranimalium |
| 99 | 101702 | 101848 | + | NZ_CP016540.2 | Planococcus versutus |
| 100 | 1648882 | 1649028 | - | NZ_CP013661.2 | Planococcus kocurii |
| 101 | 113849 | 113995 | + | NZ_CP019401.1 | Planococcus faecalis |
| 102 | 113713 | 113859 | + | NZ_CP016537.2 | Planococcus halocryophilus |
| 103 | 261253 | 261405 | + | NZ_CP022680.1 | Streptococcus respiraculi |
| 104 | 118216 | 118368 | + | NZ_CP034543.1 | Streptococcus periodonticum |
| 105 | 119653 | 119805 | + | NZ_CP012805.1 | Streptococcus anginosus |
| 106 | 239652 | 239804 | + | NZ_AP014612.1 | Streptococcus troglodytae |
| 107 | 1952751 | 1952903 | - | NC_015875.1 | Streptococcus pseudopneumoniae IS7493 |
| 108 | 1815906 | 1816058 | + | NZ_CP013237.1 | Streptococcus mutans |
| 109 | 866118 | 866270 | + | NZ_CP014159.1 | Aerococcus christensenii |
| 110 | 130156 | 130308 | + | NZ_LS483436.1 | Streptococcus intermedius |
| 111 | 327061 | 327213 | + | NZ_LS483343.1 | Streptococcus ferus |
| 112 | 985326 | 985478 | - | NZ_CP049740.1 | Jeotgalibaca arthritidis |
| 113 | 399255 | 399407 | - | NZ_CP016953.1 | Streptococcus himalayensis |
| 114 | 244151 | 244300 | + | NZ_LR134483.1 | Listeria grayi |
| 115 | 4525139 | 4525270 | - | NZ_CP006837.1 | Lysinibacillus varians |
| 116 | 219460 | 219591 | + | NZ_CP019980.1 | Lysinibacillus sphaericus |
| 117 | 1866158 | 1866310 | - | NZ_CP065061.1 | Streptococcus equi subsp. zooepidemicus |
| 118 | 2073103 | 2073255 | - | NZ_AP022822.1 | Enterococcus saigonensis |
| 119 | 995273 | 995422 | + | NZ_CP017713.1 | Loigolactobacillus coryniformis subsp. coryniformis KCTC 3167 = DSM 20001 |
| 120 | 1265893 | 1266045 | + | NZ_CP049889.1 | Jeotgalibaca porci |
| 121 | 737731 | 737883 | + | NZ_LR134293.1 | Streptococcus canis |
| 122 | 3689023 | 3689175 | + | NZ_CP021874.1 | Enterococcus wangshanyuanii |
| 123 | 2029907 | 2030059 | - | NZ_LR594046.1 | Streptococcus dysgalactiae |
| 124 | 232565 | 232717 | - | NZ_CP023011.2 | Enterococcus hirae |
| 125 | 1957612 | 1957761 | - | NZ_CP017194.1 | Lactococcus carnosus |
| 126 | 175550 | 175681 | + | NZ_CP010820.1 | Lysinibacillus fusiformis |
| 127 | 218339 | 218488 | + | NZ_CP017195.1 | Lactococcus paracarnosus |
| 128 | 1653736 | 1653888 | - | NZ_CP010450.1 | Streptococcus pyogenes |
| 129 | 469974 | 470126 | + | NZ_CP016843.1 | Carnobacterium divergens |
| 130 | 1845045 | 1845197 | - | NZ_LS483383.1 | Streptococcus cristatus ATCC 51100 |
| 131 | 2128108 | 2128260 | - | NC_020995.1 | Enterococcus casseliflavus EC20 |
| 132 | 2616537 | 2616689 | - | NZ_CP018061.1 | Enterococcus mundtii |
| 133 | 245738 | 245890 | + | NC_017581.1 | Streptococcus thermophilus JIM 8232 |
| 134 | 1713121 | 1713270 | - | NZ_AP014680.1 | Paucilactobacillus hokkaidonensis JCM 18461 |
| 135 | 542268 | 542420 | + | NZ_CP049886.1 | Vagococcus coleopterorum |
| 136 | 74888 | 75037 | - | NZ_CP020772.1 | Halobacillus mangrovi |
| 137 | 120387 | 120530 | + | NZ_CP012024.1 | Bacillus smithii |
| 138 | 567019 | 567171 | + | NZ_CP060720.1 | Vagococcus carniphilus |
| 139 | 1223135 | 1223287 | - | NZ_CP034465.1 | Jeotgalibaca ciconiae |
| 140 | 111058 | 111180 | + | NZ_CP024035.1 | Priestia aryabhattai |
| 141 | 398507 | 398650 | - | NZ_CP027770.1 | Staphylococcus felis |
| 142 | 127713 | 127862 | + | NZ_CP009416.1 | Jeotgalibacillus malaysiensis |
| 143 | 1774320 | 1774451 | - | NZ_CP041305.1 | Cytobacillus ciccensis |
| 144 | 2446917 | 2447060 | - | NZ_CP018776.1 | Staphylococcus condimenti |
| 145 | 159890 | 160024 | + | NZ_CP029797.1 | Paraliobacillus zengyii |
| 146 | 2676079 | 2676222 | - | NZ_CP033460.1 | Staphylococcus debuckii |
| 147 | 6857 | 7000 | - | NZ_CP033460.1 | Staphylococcus debuckii |
| 148 | 120580 | 120729 | + | NC_011899.1 | Halothermothrix orenii H 168 |
| 149 | 1784313 | 1784465 | - | NZ_CP019728.1 | Jeotgalibaca dankookensis |
| 150 | 113377 | 113526 | + | NZ_CP065425.1 | Heyndrickxia vini |
| 151 | 165005 | 165154 | + | NC_014378.1 | Acetohalobium arabaticum DSM 5501 |
| 152 | 727235 | 727384 | + | NZ_AP019309.1 | Intestinibaculum porci |
| 153 | 2400573 | 2400713 | + | NZ_CP068061.1 | Mammaliicoccus vitulinus |
| 154 | 1358160 | 1358312 | + | NC_000918.1 | Aquifex aeolicus VF5 |
| 155 | 1483200 | 1483331 | - | NZ_AP019711.1 | Amedibacterium intestinale |
| 156 | 242255 | 242389 | + | NC_014925.1 | Staphylococcus pseudintermedius HKU10-03 |
| 157 | 1393141 | 1393290 | - | NZ_CP018622.1 | Virgibacillus dokdonensis |
| 158 | 1824946 | 1825098 | - | NZ_CP012047.1 | Tetragenococcus halophilus |
| 159 | 120903 | 121049 | + | NC_018704.1 | Amphibacillus xylanus NBRC 15112 |
| 160 | 119834 | 119965 | + | NZ_CP042593.1 | Bacillus dafuensis |
| 161 | 2023583 | 2023726 | + | NZ_CP022096.2 | Staphylococcus pettenkoferi |
| 162 | 4718147 | 4718296 | + | NZ_CP018866.1 | Sutcliffiella cohnii |
| 163 | 126725 | 126859 | + | NC_017668.1 | Halobacillus halophilus DSM 2266 |
| 164 | 542112 | 542243 | + | NZ_LR215048.1 | Acholeplasma axanthum |
| 165 | 3296427 | 3296555 | + | NZ_CP068170.1 | Erysipelatoclostridium ramosum |
| 166 | 214827 | 214970 | + | NZ_LT906464.1 | Staphylococcus muscae |
| 167 | 78312 | 78461 | - | NZ_CP015438.1 | Anoxybacillus amylolyticus |
| 168 | 2326267 | 2326407 | - | NZ_CP022046.2 | Mammaliicoccus sciuri |
| 169 | 3246778 | 3246927 | + | NZ_CP064060.1 | Anoxybacillus caldiproteolyticus |
| 170 | 133145 | 133276 | + | NZ_CP041666.1 | Radiobacillus deserti |
| 171 | 3654080 | 3654229 | - | NZ_CP033433.1 | Cohnella candidum |
| 172 | 182306 | 182455 | + | NC_019978.1 | Halobacteroides halobius DSM 5150 |
| 173 | 1300079 | 1300222 | + | NZ_CP014167.1 | Paenibacillus yonginensis |
| 174 | 3643817 | 3643948 | - | NZ_CP014167.1 | Paenibacillus yonginensis |
| 175 | 191125 | 191256 | - | NZ_CP022437.1 | Virgibacillus necropolis |
| 176 | 1800956 | 1801105 | - | NC_013939.1 | Deferribacter desulfuricans SSM1 |
| 177 | 102748 | 102897 | + | NZ_CP012152.1 | Anoxybacillus gonensis |
| 178 | 1268211 | 1268333 | + | NZ_CP023643.1 | Brochothrix thermosphacta |
| 179 | 4066090 | 4066221 | - | NZ_CP016020.1 | Bacillus weihaiensis |
| 180 | 2562405 | 2562533 | - | NZ_CP013862.1 | Lentibacillus amyloliquefaciens |
| 181 | 199134 | 199283 | - | NZ_AP017312.1 | Aneurinibacillus soli |
| 182 | 1426354 | 1426485 | - | NZ_CP009302.1 | Berryella intestinalis |
| 183 | 337682 | 337819 | + | NZ_CP013213.1 | Erysipelothrix larvae |
| 184 | 2277901 | 2278041 | - | NZ_LT906462.1 | Mammaliicoccus stepanovicii |
| 185 | 290947 | 291090 | + | NC_019897.1 | Thermobacillus composti KWC4 |
| 186 | 107879 | 108025 | + | NC_010556.1 | Exiguobacterium sibiricum 255-15 |
| 187 | 69781 | 69930 | + | NZ_CP027228.1 | Mogibacterium diversum |
| 188 | 128363 | 128512 | + | NZ_CP017962.1 | Virgibacillus halodenitrificans |
| 189 | 1969926 | 1970057 | - | NZ_CP022983.1 | Cytobacillus kochii |
| 190 | 604064 | 604213 | - | NC_013894.1 | Thermocrinis albus DSM 14484 |
| 191 | 33398 | 33556 | + | NC_021846.1 | Spiroplasma taiwanense CT-1 |
| 192 | 1561592 | 1561735 | - | NZ_CP019573.1 | Abyssicoccus albus |
| 193 | 1545276 | 1545410 | + | NZ_CP020773.1 | Staphylococcus lutrae |
| 194 | 4011697 | 4011828 | - | NZ_CP019659.1 | Paenibacillus larvae subsp. larvae |
| 195 | 2768906 | 2769049 | - | NC_014831.1 | Thermaerobacter marianensis DSM 12885 |
| 196 | 1515747 | 1515896 | + | NZ_CP067016.1 | Anaerococcus obesiensis |
| 197 | 900826 | 900975 | + | NZ_CP066014.1 | Anaerococcus vaginalis |
| 198 | 246376 | 246519 | + | NZ_CP045927.1 | Staphylococcus agnetis |
| 199 | 2252125 | 2252268 | - | NZ_CP008747.1 | Staphylococcus hyicus |
| 200 | 511237 | 511377 | + | NZ_LT821227.1 | Phoenicibacter congonensis |
| 201 | 2303220 | 2303369 | - | NC_015520.1 | Mahella australiensis 50-1 BON |
| 202 | 1308524 | 1308682 | + | NZ_CP007028.1 | Thermocrinis ruber |
| 203 | 2768942 | 2769091 | + | NZ_CP011058.1 | Paenibacillus beijingensis |
| 204 | 112334 | 112465 | + | NZ_CP024848.1 | Oceanobacillus zhaokaii |
| 205 | 1112100 | 1112240 | - | NC_013170.1 | Cryptobacterium curtum DSM 15641 |
| 206 | 1474548 | 1474697 | - | NZ_AP013035.1 | Thermosulfidibacter takaii ABI70S6 |
| 207 | 261511 | 261642 | + | NZ_LR134439.1 | Erysipelothrix rhusiopathiae |
| 208 | 510397 | 510528 | + | NZ_CP034234.1 | Erysipelothrix piscisicarius |
| 209 | 806664 | 806801 | - | NC_017161.1 | Hydrogenobacter thermophilus TK-6 |
| 210 | 1682789 | 1682929 | - | NZ_CP011402.1 | Denitrobacterium detoxificans |
| 211 | 1059268 | 1059411 | + | NZ_CP034791.1 | Caldicellulosiruptor changbaiensis |
| 212 | 1750952 | 1751083 | - | NZ_CP041217.1 | Saccharibacillus brassicae |
| 213 | 2111951 | 2112085 | - | NC_014377.1 | Thermosediminibacter oceani DSM 16646 |
| 214 | 366897 | 367034 | - | NZ_CP060715.1 | Erysipelothrix inopinata |
| 215 | 1422189 | 1422356 | - | NZ_CP006018.1 | Bifidobacterium indicum LMG 11587 = DSM 20214 |
| 216 | 1459326 | 1459493 | - | NZ_CP007287.1 | Bifidobacterium coryneforme |
| 217 | 109207 | 109338 | + | NZ_CP019699.1 | Novibacillus thermophilus |
| 218 | 4369344 | 4369475 | + | NZ_CP045295.1 | Paenibacillus cellulositrophicus |
| 219 | 643025 | 643156 | + | NZ_CP020028.1 | Paenibacillus kribbensis |
| 220 | 3198005 | 3198136 | - | NZ_CP020028.1 | Paenibacillus kribbensis |
| 221 | 2342340 | 2342483 | - | NC_009437.1 | Caldicellulosiruptor saccharolyticus DSM 8903 |
| 222 | 2970873 | 2971004 | - | NZ_CP054614.1 | Paenibacillus barcinonensis |
| 223 | 679893 | 680042 | - | NZ_CP054614.1 | Paenibacillus barcinonensis |
| 224 | 324517 | 324666 | + | NC_022549.1 | Acholeplasma brassicae |
| 225 | 3964718 | 3964849 | + | NZ_CP016809.1 | Paenibacillus ihbetae |
| 226 | 5222462 | 5222611 | + | NZ_CP016809.1 | Paenibacillus ihbetae |
| 227 | 803240 | 803371 | - | NC_016641.1 | Paenibacillus terrae HPL-003 |
| 228 | 1160443 | 1160592 | + | NZ_LT635772.1 | Anaerococcus mediterraneensis |
| 229 | 1554366 | 1554497 | - | NZ_CP045298.1 | Paenibacillus brasilensis |
| 230 | 354798 | 354965 | + | NZ_AP012322.1 | Bifidobacterium angulatum DSM 20098 = JCM 7096 |
| 231 | 3602678 | 3602809 | - | NZ_CP013023.1 | Paenibacillus bovis |
| 232 | 7294 | 7443 | + | NZ_CP045296.1 | Paenibacillus cellulositrophicus |
| 233 | 1942269 | 1942436 | - | NZ_CP006712.1 | Bifidobacterium breve JCM 7017 |
| 234 | 2021301 | 2021468 | - | NZ_CP026999.1 | Bifidobacterium longum |
| 235 | 3336773 | 3336916 | + | NZ_CP026520.1 | Paenibacillus chitinolyticus |
| 236 | 1691099 | 1691266 | + | NZ_CP011786.1 | Bifidobacterium actinocoloniiforme DSM 22766 |
| 237 | 1752401 | 1752568 | - | NC_018720.1 | Bifidobacterium asteroides PRL2011 |
| 238 | 1273704 | 1273853 | - | NZ_LR134524.1 | Peptoniphilus harei |
| 239 | 1399354 | 1399497 | - | NC_014657.1 | Caldicellulosiruptor owensensis OL |
| 240 | 1137032 | 1137175 | + | NC_014392.1 | Caldicellulosiruptor obsidiansis OB47 |
| 241 | 1020474 | 1020617 | - | NC_015949.1 | Caldicellulosiruptor lactoaceticus 6A |
| 242 | 1231796 | 1231939 | + | NC_014652.1 | Caldicellulosiruptor hydrothermalis 108 |
| 243 | 1623368 | 1623511 | - | NC_014721.1 | Caldicellulosiruptor kristjanssonii I77R1B |
| 244 | 1350126 | 1350269 | + | NC_014720.1 | Caldicellulosiruptor kronotskyensis 2002 |
| 245 | 1621656 | 1621799 | - | NC_012034.1 | Caldicellulosiruptor bescii DSM 6725 |
| 246 | 4560402 | 4560545 | + | NZ_CP013652.1 | Paenibacillus naphthalenovorans |
| 247 | 548197 | 548328 | + | NZ_CP013652.1 | Paenibacillus naphthalenovorans |
| 248 | 3321687 | 3321818 | + | NZ_CP048209.1 | Paenibacillus lycopersici |
| 249 | 4255990 | 4256121 | - | NZ_CP034346.1 | Paenibacillus lutimineralis |
| 250 | 6457086 | 6457217 | - | NZ_CP009287.1 | Paenibacillus graminis |
| 251 | 819668 | 819826 | - | NC_016048.1 | Oscillibacter valericigenes Sjm18-20 |
| 252 | 7422943 | 7423074 | - | NZ_CP009285.1 | Paenibacillus borealis |
| 253 | 2642745 | 2642873 | - | NZ_CP011366.1 | Salinicoccus halodurans |
| 254 | 1151537 | 1151668 | - | NZ_CP048429.1 | Paenibacillus jilunlii |
| 255 | 1173799 | 1173930 | - | NZ_CP068595.1 | Paenibacillus sonchi |
| 256 | 7158701 | 7158832 | - | NZ_LN831776.1 | Paenibacillus riograndensis SBR5 |
| 257 | 3703105 | 3703236 | + | NZ_CP035492.1 | Paenibacillus protaetiae |
| 258 | 1937820 | 1937963 | - | NC_013385.1 | Ammonifex degensii KC4 |
| 259 | 33817 | 33975 | + | NC_022998.1 | Spiroplasma apis B31 |
| 260 | 1676049 | 1676198 | - | NC_015388.1 | Desulfobacca acetoxidans DSM 11109 |
| 261 | 2258745 | 2258915 | + | NZ_CP033719.1 | Propionibacterium acidifaciens |
| 262 | 1613947 | 1614096 | + | NZ_CP009286.1 | Paenibacillus stellifer |
| 263 | 2211163 | 2211333 | - | NZ_LR134442.1 | Propionibacterium australiense |
| 264 | 163542 | 163694 | - | NC_014962.1 | Isosphaera pallida ATCC 43644 |
| 265 | 1208797 | 1208946 | - | NC_011297.1 | Dictyoglomus thermophilum H-6-12 |
| 266 | 1736682 | 1736813 | + | NZ_CP021780.1 | Paenibacillus donghaensis |
| 267 | 1212724 | 1212891 | - | NZ_CP062938.1 | Bifidobacterium eulemuris |
| 268 | 1648695 | 1648862 | + | NZ_CP062948.1 | Bifidobacterium lemurum |
| 269 | 1689602 | 1689778 | + | NC_014330.1 | Brachyspira pilosicoli 95/1000 |
| 270 | 2400060 | 2400209 | - | NC_013172.1 | Brachybacterium faecium DSM 4810 |
| 271 | 2837880 | 2838017 | + | NZ_CP036402.1 | Egibacter rhizosphaerae |
| 272 | 6246 | 6398 | + | NZ_CP014699.1 | Streptococcus pantholopis |
| 273 | 2711354 | 2711518 | - | NC_014221.1 | Truepera radiovictrix DSM 17093 |
| 274 | 2191504 | 2191653 | - | NC_003869.1 | Caldanaerobacter subterraneus subsp. tengcongensis MB4 |
++ More..
| Neighborhood Conservation Analysis |
* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Representative Chosen(Species): NZ_CP045605.1
| Sr.No. | Domain | Co-occurrence Frequency | No. of species in which domain occurs with smORF | Median distance b/w smORF and domain bearing ORFs | Orientation relative to smORF | PFAM Information |
|---|---|---|---|---|---|---|
| 1 | PF00584.22 | 0.9 | 239 | 19.5 | same-strand | SecE/Sec61-gamma subunits of protein translocation complex |
| 2 | PF02357.21 | 0.9 | 240 | 306.0 | same-strand | Transcription termination factor nusG |
| 3 | PF00467.31 | 0.7 | 188 | 316 | same-strand | KOW motif |
| 4 | PF03946.16 | 0.7 | 187 | 996.0 | same-strand | Ribosomal protein L11, N-terminal domain |
| 5 | PF00298.21 | 0.7 | 188 | 996.5 | same-strand | Ribosomal protein L11, RNA binding domain |
| 6 | PF00687.23 | 0.69 | 185 | 1516 | same-strand | Ribosomal protein L1p/L10e family |
++ More..