Result : EXP00921
| Protein Information |
| Information Type | Description |
|---|---|
| Protein name | EXP00921 |
| NCBI Accession ID | CP001509.3 |
| Organism | Escherichia coli BL21(DE3) |
| Left | 3282160 |
| Right | 3282276 |
| Strand | - |
| Nucleotide Sequence | ATGTTGAGATACTGGCTGGTTAACGGTGGAATAATCACCCGCAATGCCTGGGGAATAATGACCTGGCGTAGCGTAACCGGGTTGGGTAATCCCAGTGACCGAGCCGCTTCATGTTGA |
| Sequence | MLRYWLVNGGIITRNAWGIMTWRSVTGLGNPSDRAASC |
| Source of smORF | Ribo-seq |
| Function | |
| Pubmed ID | 30904393 |
| Domain | |
| Functional Category | Function not yet assigned |
| Uniprot ID | |
| ORF Length (Amino Acid) | 38 |
++ More..
| Conservation Analysis |
No. of Species: 106
| Sr.No. | Left Position | Right Position | Strand | NCBI Accession id | Species Name |
|---|---|---|---|---|---|
| 1 | 3421003 | 3421119 | - | NC_000913.3 | Escherichia coli str. K-12 substr. MG1655 |
| 2 | 4156136 | 4156252 | - | NC_002695.2 | Escherichia coli O157:H7 str. Sakai |
| 3 | 3404046 | 3404162 | - | NC_004337.2 | Shigella flexneri 2a str. 301 |
| 4 | 403794 | 403910 | + | NZ_CP061527.1 | Shigella dysenteriae |
| 5 | 2342279 | 2342395 | - | NZ_CP057657.1 | Escherichia fergusonii |
| 6 | 2009313 | 2009432 | - | NZ_CP054058.1 | Scandinavium goeteborgense |
| 7 | 3582871 | 3582987 | - | NZ_CP034148.1 | Pantoea agglomerans |
| 8 | 1459261 | 1459383 | - | NZ_CP045300.1 | Kosakonia arachidis |
| 9 | 930207 | 930308 | + | NZ_CP045300.1 | Kosakonia arachidis |
| 10 | 3361213 | 3361323 | - | NZ_CP013990.1 | Leclercia adecarboxylata |
| 11 | 4600983 | 4601105 | - | NZ_CP043318.1 | Enterobacter chengduensis |
| 12 | 3791411 | 3791527 | - | NZ_CP015749.1 | Pectobacterium parmentieri |
| 13 | 4415280 | 4415408 | - | NZ_CP063425.1 | Kosakonia pseudosacchari |
| 14 | 45896 | 46018 | - | NZ_CP027107.1 | Cronobacter sakazakii |
| 15 | 3404607 | 3404714 | + | NZ_CP012264.1 | Cronobacter condimenti 1330 |
| 16 | 4171941 | 4172063 | - | NZ_AP022508.1 | Enterobacter bugandensis |
| 17 | 2058117 | 2058239 | + | NZ_CP015750.1 | Pectobacterium wasabiae CFBP 3304 |
| 18 | 112495 | 112623 | - | NZ_CP015750.1 | Pectobacterium wasabiae CFBP 3304 |
| 19 | 293094 | 293216 | + | NZ_CP009125.1 | Pectobacterium atrosepticum |
| 20 | 2223047 | 2223175 | - | NZ_CP033744.1 | Citrobacter freundii |
| 21 | 2859709 | 2859837 | + | NZ_CP044098.1 | Citrobacter portucalensis |
| 22 | 728966 | 729088 | + | NZ_CP016337.1 | Kosakonia sacchari |
| 23 | 451474 | 451596 | + | NZ_LN907827.1 | Erwinia gerundensis |
| 24 | 3320202 | 3320324 | + | NZ_CP012257.1 | Cronobacter universalis NCTC 9529 |
| 25 | 302508 | 302621 | + | NZ_CP038498.1 | Pectobacterium punjabense |
| 26 | 4148919 | 4149035 | - | NZ_CP012871.1 | [Enterobacter] lignolyticus |
| 27 | 1975741 | 1975869 | + | NZ_CP065044.1 | Pectobacterium aroidearum |
| 28 | 4056233 | 4056346 | + | NZ_CP017482.1 | Pectobacterium polaris |
| 29 | 1316898 | 1317011 | - | NZ_CP047495.1 | Pectobacterium brasiliense |
| 30 | 280692 | 280808 | + | NZ_CP034938.1 | Pectobacterium odoriferum |
| 31 | 3038702 | 3038830 | - | NZ_CP034938.1 | Pectobacterium odoriferum |
| 32 | 4550757 | 4550873 | - | NZ_CP051652.1 | Pectobacterium carotovorum |
| 33 | 2508867 | 2508989 | - | NZ_CP009787.1 | Yersinia rohdei |
| 34 | 342950 | 343060 | + | NZ_CP023529.1 | Lelliottia amnigena |
| 35 | 4234424 | 4234537 | - | NZ_CP043727.1 | Yersinia canariae |
| 36 | 284367 | 284483 | + | NZ_CP046293.1 | Yersinia intermedia |
| 37 | 3021199 | 3021297 | - | NZ_AP023184.1 | Buttiauxella agrestis |
| 38 | 2342119 | 2342238 | - | NZ_CP050508.1 | Raoultella terrigena |
| 39 | 894139 | 894249 | + | NC_013716.1 | Citrobacter rodentium ICC168 |
| 40 | 1361014 | 1361148 | + | NZ_CP023009.1 | Lonsdalea britannica |
| 41 | 432867 | 432971 | + | NZ_CP061511.1 | Mixta calida |
| 42 | 3495537 | 3495656 | + | NZ_CP012676.1 | Pseudomonas versuta |
| 43 | 2205243 | 2205374 | + | NZ_CP047242.1 | Trichormus variabilis 0441 |
| 44 | 1477588 | 1477701 | + | NZ_CP017476.1 | Hydrogenophaga crassostreae |
| 45 | 1016070 | 1016201 | - | NZ_LR215729.2 | Pseudomonas marincola |
| 46 | 886557 | 886688 | - | NZ_CP042304.1 | Devosia ginsengisoli |
| 47 | 3423160 | 3423258 | + | NZ_CP062253.1 | Pseudomonas gozinkensis |
| 48 | 1575572 | 1575670 | - | NZ_CP014205.2 | Pseudomonas glycinae |
| 49 | 6295349 | 6295462 | - | NZ_LR134302.1 | Achromobacter spanius |
| 50 | 1507595 | 1507723 | + | NZ_CP032093.1 | Vibrio alfacsensis |
| 51 | 337880 | 337978 | - | NZ_CP030105.1 | Lactiplantibacillus plantarum |
| 52 | 1836117 | 1836239 | - | NZ_AP014635.1 | Vibrio tritonius |
| 53 | 3313919 | 3314020 | - | NZ_CP014870.1 | Pseudomonas silesiensis |
| 54 | 470447 | 470560 | - | NZ_CP043146.1 | Bordetella holmesii |
| 55 | 412894 | 413001 | - | NZ_CP045871.1 | Litoricola lipolytica |
| 56 | 5027901 | 5028008 | + | NZ_CP048878.1 | Spartinivicinus ruber |
| 57 | 2288106 | 2288234 | + | NZ_CP054836.1 | Oricola thermophila |
| 58 | 1485534 | 1485632 | - | NZ_CP018312.1 | Vibrio rotiferianus |
| 59 | 1135432 | 1135563 | + | NZ_CP044543.1 | Bradyrhizobium betae |
| 60 | 1858615 | 1858716 | - | NC_009767.1 | Roseiflexus castenholzii DSM 13941 |
| 61 | 1549531 | 1549629 | - | NZ_AP019700.1 | Stella humosa |
| 62 | 2988349 | 2988453 | - | NZ_CP011412.1 | Sedimenticola thiotaurini |
| 63 | 3535542 | 3535643 | + | NZ_CP045295.1 | Paenibacillus cellulositrophicus |
| 64 | 213562 | 213681 | + | NZ_CP031415.1 | Saccharospirillum mangrovi |
| 65 | 1319470 | 1319571 | - | NZ_CP043661.1 | Kribbella qitaiheensis |
| 66 | 580780 | 580887 | - | NC_013223.1 | Desulfohalobium retbaense DSM 5692 |
| 67 | 583757 | 583879 | - | NC_013223.1 | Desulfohalobium retbaense DSM 5692 |
| 68 | 6734327 | 6734437 | + | NZ_CP034550.1 | Saccharothrix syringae |
| 69 | 912252 | 912365 | - | NZ_CP011797.1 | Reinekea forsetii |
| 70 | 871987 | 872094 | + | NZ_CP007142.1 | Gynuella sunshinyii YC6258 |
| 71 | 3936398 | 3936496 | + | NZ_CP027668.1 | Phreatobacter cathodiphilus |
| 72 | 2883300 | 2883398 | - | NZ_CP039690.1 | Phreatobacter stygius |
| 73 | 1334157 | 1334273 | - | NZ_CP039690.1 | Phreatobacter stygius |
| 74 | 2289644 | 2289754 | - | NZ_CP045737.1 | Aeromicrobium yanjiei |
| 75 | 356210 | 356311 | - | NC_021177.1 | Streptomyces fulvissimus DSM 40593 |
| 76 | 1741892 | 1742002 | + | NZ_CP034036.1 | Brenneria nigrifluens DSM 30175 = ATCC 13028 |
| 77 | 736310 | 736408 | - | NZ_CP022604.1 | [Ochrobactrum] quorumnocens |
| 78 | 1535175 | 1535276 | + | NZ_CP014912.1 | Secundilactobacillus paracollinoides |
| 79 | 8092671 | 8092772 | + | NC_009142.1 | Saccharopolyspora erythraea NRRL 2338 |
| 80 | 1960972 | 1961085 | + | NZ_CP032694.1 | Rhizobium jaguaris |
| 81 | 1400122 | 1400220 | + | NZ_CP029451.1 | Sinorhizobium fredii CCBAU 25509 |
| 82 | 572428 | 572526 | + | NZ_CP046908.1 | Stappia indica |
| 83 | 2487140 | 2487259 | + | NZ_CP031555.1 | Thalassospira indica |
| 84 | 1894939 | 1895043 | + | NZ_CP061498.1 | Roseicitreum antarcticum |
| 85 | 4606852 | 4606968 | - | NZ_AP022561.1 | Mycolicibacterium aichiense |
| 86 | 2762856 | 2762969 | + | NZ_AP018933.1 | Zymobacter palmae |
| 87 | 530515 | 530622 | + | NC_006177.1 | Symbiobacterium thermophilum IAM 14863 |
| 88 | 3570005 | 3570121 | - | NZ_CP021983.2 | Halomicronema hongdechloris C2206 |
| 89 | 1273916 | 1274014 | + | NZ_CP023067.1 | Ensifer sojae CCBAU 05684 |
| 90 | 2255650 | 2255751 | + | NC_008786.1 | Verminephrobacter eiseniae EF01-2 |
| 91 | 1475285 | 1475386 | - | NZ_CP015079.1 | Nocardioides dokdonensis FR1436 |
| 92 | 997963 | 998073 | - | NC_018017.1 | Desulfitobacterium dehalogenans ATCC 51507 |
| 93 | 293942 | 294040 | - | NZ_CP017326.1 | Weissella soli |
| 94 | 2064326 | 2064427 | - | NZ_CP040887.1 | Serinicoccus chungangensis |
| 95 | 1615541 | 1615642 | - | NZ_CP011545.1 | Corynebacterium testudinoris |
| 96 | 417171 | 417284 | + | NZ_CP061799.1 | Desulfonema limicola |
| 97 | 2775435 | 2775551 | + | NC_017956.1 | Tistrella mobilis KA081020-065 |
| 98 | 2526793 | 2526924 | + | NC_019689.1 | Pleurocapsa sp. PCC 7327 |
| 99 | 6719734 | 6719835 | + | NZ_CP016353.1 | Prauserella marina |
| 100 | 1138725 | 1138835 | - | NC_011830.1 | Desulfitobacterium hafniense DCB-2 |
| 101 | 765579 | 765683 | - | NZ_LT960611.1 | Vibrio tapetis subsp. tapetis |
| 102 | 4743 | 4862 | + | NZ_CP019237.1 | Rhodoferax koreense |
| 103 | 731868 | 731987 | - | NZ_CP019236.1 | Rhodoferax koreense |
| 104 | 1798095 | 1798202 | + | NZ_CP009238.1 | Basilea psittacipulmonis DSM 24701 |
| 105 | 895666 | 895776 | + | NC_003197.2 | Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 |
| 106 | 665900 | 666019 | - | NZ_CP047385.1 | Pandoraea fibrosis |
| 107 | 1815450 | 1815569 | - | NZ_CP021434.1 | Tumebacillus avium |
| 108 | 3673854 | 3673982 | + | NZ_CP041636.1 | Ferrovibrio terrae |
| 109 | 621769 | 621888 | + | NC_013947.1 | Stackebrandtia nassauensis DSM 44728 |
| 110 | 1885146 | 1885256 | - | NC_012881.1 | Maridesulfovibrio salexigens DSM 2638 |
| 111 | 3418128 | 3418244 | + | NC_015730.1 | Roseobacter litoralis Och 149 |
| 112 | 102195 | 102296 | + | NZ_CP049933.1 | Leucobacter coleopterorum |
| 113 | 2297287 | 2297388 | - | NZ_CP038213.1 | Ornithinimicrobium flavum |
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| Neighborhood Conservation Analysis |
* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Representative Chosen(Species): NZ_CP057657.1
| Sr.No. | Domain | Co-occurrence Frequency | No. of species in which domain occurs with smORF | Median distance b/w smORF and domain bearing ORFs | Orientation relative to smORF | PFAM Information |
|---|---|---|---|---|---|---|
| 1 | PF00528.24 | 1.0 | 106 | -98.0 | opposite-strand | Binding-protein-dependent transport system inner membrane component |
| 2 | PF00005.29 | 0.95 | 101 | 1316.5 | opposite-strand | ABC transporter |
| 3 | PF02463.21 | 0.64 | 68 | 1317 | opposite-strand | RecF/RecN/SMC N terminal domain |
| 4 | PF00497.22 | 0.98 | 104 | 933.0 | opposite-strand | Bacterial extracellular solute-binding proteins, family 3 |
++ More..