* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Representative Chosen(Species): NC_000913.3
Sr.No. |
Domain |
Co-occurrence Frequency |
No. of species in which domain occurs with smORF |
Median distance b/w smORF and domain bearing ORFs |
Orientation relative to smORF |
PFAM Information |
1
|
PF04225.14
|
1.0
|
4
|
795
|
same-strand
|
Opacity-associated protein A LysM-like domain
|
2
|
PF08525.13
|
1.0
|
4
|
795
|
same-strand
|
Opacity-associated protein A N-terminal motif
|
3
|
PF00254.30
|
1.0
|
4
|
-43
|
opposite-strand
|
FKBP-type peptidyl-prolyl cis-trans isomerase
|
4
|
PF01346.20
|
1.0
|
4
|
-43
|
opposite-strand
|
Domain amino terminal to FKBP-type peptidyl-prolyl isomerase
|
5
|
PF00324.23
|
1.0
|
4
|
173
|
opposite-strand
|
Amino acid permease
|
6
|
PF13520.8
|
1.0
|
4
|
173
|
opposite-strand
|
Amino acid permease
|
7
|
PF01814.25
|
1.0
|
4
|
1630
|
same-strand
|
Hemerythrin HHE cation binding domain
|
8
|
PF04405.16
|
1.0
|
4
|
1630
|
same-strand
|
Domain of Unknown function (DUF542)
|
9
|
PF00892.22
|
1.0
|
4
|
2400
|
same-strand
|
EamA-like transporter family
|
10
|
PF05368.15
|
0.75
|
3
|
3470.5
|
same-strand
|
NmrA-like family
|
11
|
PF13460.8
|
0.75
|
3
|
3470.5
|
same-strand
|
NAD(P)H-binding
|
12
|
PF01638.19
|
0.75
|
3
|
4419.5
|
opposite-strand
|
HxlR-like helix-turn-helix
|
++ More..