Result : EXP00901
| Protein Information |
| Information Type | Description |
|---|---|
| Protein name | EXP00901 |
| NCBI Accession ID | CP001509.3 |
| Organism | Escherichia coli BL21(DE3) |
| Left | 3820587 |
| Right | 3820862 |
| Strand | - |
| Nucleotide Sequence | GTGAACCACGCCAGACGAATAGGGAACTTACCAAAGTGTCCCATATCAGCATACAGCGCCTCGACCCCCGTAATCGACAGCACCACTGCCCCTAATGCAATAAAAGAAACCGTTTTGTATTCAAGGAAGAAATGCACCGCCCACATCGGATTCAGCGCATGCAGCACTTCCGGGTTAGCAATAATGCTACGTAACCCCAGTCCTGCCAGAATCAAAAACCAGGTCAGCATGATCGGCGCAAACAGCTTACCGACCATAGCCGTGCCATGCTTTTGA |
| Sequence | VNHARRIGNLPKCPISAYSASTPVIDSTTAPNAIKETVLYSRKKCTAHIGFSACSTSGLAIMLRNPSPARIKNQVSMIGANSLPTIAVPCF |
| Source of smORF | Ribo-seq |
| Function | |
| Pubmed ID | 30904393 |
| Domain | |
| Functional Category | Function not yet assigned |
| Uniprot ID | |
| ORF Length (Amino Acid) | 91 |
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| Conservation Analysis |
No. of Species: 48
| Sr.No. | Left Position | Right Position | Strand | NCBI Accession id | Species Name |
|---|---|---|---|---|---|
| 1 | 4258565 | 4258840 | - | NZ_CP061527.1 | Shigella dysenteriae |
| 2 | 3931786 | 3932061 | - | NC_000913.3 | Escherichia coli str. K-12 substr. MG1655 |
| 3 | 2840818 | 2841093 | + | NZ_CP057657.1 | Escherichia fergusonii |
| 4 | 4725355 | 4725630 | - | NC_002695.2 | Escherichia coli O157:H7 str. Sakai |
| 5 | 3940490 | 3940765 | - | NC_004337.2 | Shigella flexneri 2a str. 301 |
| 6 | 1178916 | 1179191 | + | NZ_LT556085.1 | Citrobacter amalonaticus |
| 7 | 493649 | 493951 | - | NZ_CP045205.1 | Citrobacter telavivensis |
| 8 | 3389674 | 3389931 | + | NZ_CP038469.1 | Citrobacter tructae |
| 9 | 3607584 | 3607859 | - | NZ_CP045769.1 | Enterobacter cancerogenus |
| 10 | 4424686 | 4424934 | + | NZ_CP012266.1 | Cronobacter dublinensis subsp. dublinensis LMG 23823 |
| 11 | 1699764 | 1700060 | + | NZ_CP042941.1 | Atlantibacter hermannii |
| 12 | 1465369 | 1465692 | + | NZ_CP065640.1 | Serratia rubidaea |
| 13 | 4056944 | 4057192 | - | NZ_CP012268.1 | Cronobacter muytjensii ATCC 51329 |
| 14 | 5167066 | 5167389 | + | NZ_LT906479.1 | Serratia ficaria |
| 15 | 4424929 | 4425204 | + | NZ_CP016948.1 | Serratia surfactantfaciens |
| 16 | 5217859 | 5218182 | + | NZ_CP038662.1 | Serratia nematodiphila |
| 17 | 4197578 | 4197826 | + | NZ_CP014137.1 | Brenneria goodwinii |
| 18 | 10498 | 10773 | - | NZ_CP032487.1 | Yersinia hibernica |
| 19 | 5078116 | 5078439 | - | NZ_CP071320.1 | Serratia ureilytica |
| 20 | 3768352 | 3768609 | - | NZ_CP017482.1 | Pectobacterium polaris |
| 21 | 7018 | 7293 | - | NZ_CP043727.1 | Yersinia canariae |
| 22 | 5263226 | 5263549 | + | NZ_CP048784.1 | Serratia liquefaciens |
| 23 | 4945559 | 4945816 | + | NZ_CP034938.1 | Pectobacterium odoriferum |
| 24 | 5403906 | 5404229 | + | NC_015567.1 | Serratia plymuthica AS9 |
| 25 | 1740182 | 1740505 | + | NZ_CP011254.1 | Serratia fonticola |
| 26 | 3949123 | 3949371 | + | NZ_CP034035.1 | Brenneria rubrifaciens |
| 27 | 4522391 | 4522639 | + | NZ_CP026377.1 | Mixta gaviniae |
| 28 | 970676 | 970978 | - | NZ_CP007044.2 | Chania multitudinisentens RB-25 |
| 29 | 5033047 | 5033310 | + | NZ_CP023525.1 | Cedecea neteri |
| 30 | 3785107 | 3785388 | + | NZ_CP065534.1 | Lonsdalea populi |
| 31 | 34221 | 34454 | - | NZ_CP042220.2 | Dickeya poaceiphila |
| 32 | 4616533 | 4616766 | + | NC_012880.1 | Musicola paradisiaca Ech703 |
| 33 | 3611010 | 3611285 | + | NZ_CP067057.1 | Rahnella aceris |
| 34 | 4775358 | 4775606 | + | NZ_CP034036.1 | Brenneria nigrifluens DSM 30175 = ATCC 13028 |
| 35 | 4548291 | 4548587 | - | NZ_CP034752.1 | Jinshanibacter zhutongyuii |
| 36 | 4647337 | 4647570 | + | NZ_CP050150.1 | Hafnia alvei |
| 37 | 4731840 | 4732073 | + | NZ_CP070503.1 | Pseudomonas atacamensis |
| 38 | 6041768 | 6042049 | + | NZ_CP024645.1 | Rhizobacter gummiphilus |
| 39 | 3724685 | 3724966 | + | NZ_CP041046.1 | Luteibacter pinisoli |
| 40 | 1243895 | 1244170 | - | NZ_CP062158.2 | Pseudomonas lundensis |
| 41 | 2672816 | 2673097 | - | NZ_CP017707.1 | Chromobacterium vaccinii |
| 42 | 1392075 | 1392302 | - | NZ_CP062252.1 | Pseudomonas allokribbensis |
| 43 | 1340917 | 1341198 | - | NZ_CP029495.1 | Chromobacterium phragmitis |
| 44 | 925464 | 925745 | - | NZ_CP035704.1 | Pseudolysobacter antarcticus |
| 45 | 612874 | 613155 | + | NC_005085.1 | Chromobacterium violaceum ATCC 12472 |
| 46 | 2505530 | 2505805 | + | NZ_CP005960.1 | Pseudomonas mandelii JR-1 |
| 47 | 5107178 | 5107459 | - | NZ_CP040017.1 | Massilia umbonata |
| 48 | 2374704 | 2374985 | - | NZ_CP010554.1 | Rugosibacter aromaticivorans |
| 49 | 776697 | 776927 | - | NZ_CP011805.1 | Pelagerythrobacter marensis |
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| Neighborhood Conservation Analysis |
* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Representative Chosen(Species): NC_000913.3
| Sr.No. | Domain | Co-occurrence Frequency | No. of species in which domain occurs with smORF | Median distance b/w smORF and domain bearing ORFs | Orientation relative to smORF | PFAM Information |
|---|---|---|---|---|---|---|
| 1 | PF13519.8 | 0.73 | 35 | 2230.5 | same-strand | von Willebrand factor type A domain |
| 2 | PF20030.1 | 0.73 | 35 | 714.5 | same-strand | MoxR domain in the MoxR-vWA-beta-propeller ternary systems |
| 3 | PF07728.16 | 0.75 | 36 | 727 | same-strand | AAA domain (dynein-related subfamily) |
| 4 | PF12592.10 | 0.73 | 35 | 714.5 | same-strand | Protein of unknown function (DUF3763) |
| 5 | PF17868.3 | 0.73 | 35 | 714.5 | same-strand | AAA lid domain |
| 6 | PF02705.18 | 0.98 | 47 | -275.0 | opposite-strand | K+ potassium transporter |
| 7 | PF00005.29 | 0.62 | 30 | 1756.5 | opposite-strand | ABC transporter |
| 8 | PF01037.23 | 0.65 | 31 | 4783.5 | same-strand | Lrp/AsnC ligand binding domain |
| 9 | PF13412.8 | 0.69 | 33 | 4783.0 | same-strand | Winged helix-turn-helix DNA-binding |
| 10 | PF13404.8 | 0.65 | 31 | 4783.5 | same-strand | AsnC-type helix-turn-helix domain |
| 11 | PF05025.15 | 0.67 | 32 | 1334 | opposite-strand | RbsD / FucU transport protein family |
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