* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Representative Chosen(Species): NC_000913.3
Sr.No. |
Domain |
Co-occurrence Frequency |
No. of species in which domain occurs with smORF |
Median distance b/w smORF and domain bearing ORFs |
Orientation relative to smORF |
PFAM Information |
1
|
PF05433.17
|
0.75
|
3
|
2511.0
|
same-strand
|
Glycine zipper 2TM domain
|
2
|
PF13441.8
|
0.75
|
3
|
2511.0
|
same-strand
|
YMGG-like Gly-zipper
|
3
|
PF13488.8
|
0.75
|
3
|
2511.0
|
same-strand
|
Glycine zipper
|
4
|
PF00455.24
|
1.0
|
4
|
1493
|
same-strand
|
DeoR C terminal sensor domain
|
5
|
PF08220.14
|
1.0
|
4
|
1493
|
same-strand
|
DeoR-like helix-turn-helix domain
|
6
|
PF00563.22
|
1.0
|
4
|
-89
|
same-strand
|
EAL domain
|
7
|
PF00990.23
|
0.75
|
3
|
-89.0
|
same-strand
|
Diguanylate cyclase, GGDEF domain
|
8
|
PF00773.21
|
0.75
|
3
|
1049.5
|
same-strand
|
RNB domain
|
9
|
PF08206.13
|
0.75
|
3
|
1049.5
|
same-strand
|
Ribonuclease B OB domain
|
10
|
PF00575.25
|
0.75
|
3
|
1049.5
|
same-strand
|
S1 RNA binding domain
|
11
|
PF17876.3
|
0.75
|
3
|
1049.5
|
same-strand
|
Cold shock domain
|
12
|
PF13561.8
|
0.75
|
3
|
4322.5
|
same-strand
|
Enoyl-(Acyl carrier protein) reductase
|
13
|
PF00106.27
|
0.75
|
3
|
4322.5
|
same-strand
|
short chain dehydrogenase
|
14
|
PF01253.24
|
0.75
|
3
|
2855.0
|
opposite-strand
|
Translation initiation factor SUI1
|
++ More..